Are you sure that you have write permission to the directory that R is trying to
write to?
John Kane
Kingston ON Canada
> -----Original Message-----
> From: joao.fadista at med.lu.se
> Sent: Wed, 12 Sep 2012 12:37:42 +0000
> To: r-help at r-project.org
> Subject: [R] SNPRelate package error
>
> Dear all,
>
> I am using the R package SNPRelate but I found an error when I run the
> following command. Do you know what might be the problem? Thanks in
> advance.
>
>
>> vcf.fn <- system.file("extdata", "sequence.vcf",
package="SNPRelate")
>> snpgdsVCF2GDS(vcf.fn, "test.gds")
> Start snpgdsVCF2GDS ...
> Open
>
C:/Users/med-jft/Documents/R/win-library/2.15/SNPRelate/extdata/sequence.vcf
> Scanning ...
> Error in createfn.gds(outfn.gds) :
> Can not create file 'test.gds'. Access is denied.
>
>> sessionInfo()
> R version 2.15.0 (2012-03-30)
> Platform: x86_64-pc-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=Swedish_Sweden.1252 LC_CTYPE=Swedish_Sweden.1252
> LC_MONETARY=Swedish_Sweden.1252 LC_NUMERIC=C
> LC_TIME=Swedish_Sweden.1252
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] SNPRelate_0.9.7 gdsfmt_0.9.10
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.0
>
> Best regards,
> Jo?o Fadista, Ph.D.
> Post Doc
>
> Lund University Diabetes Centre
> CRC, Malm? University Hospital
> Jan Waldenstr?ms gata 35, building 60, level 13
> SE-205 02 Malm?, Sweden
> Tel: +46 (0)40 391237
> e-mail: joao.fadista at med.lu.se
>
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