Hello,
Why do you think it is a package error?
The error message says that "the file [...] has different numbers of
columns". Please check that file first.
Regards,
Pascal
Le 22/01/2013 16:05, sun-ye at scib.ac.cn a ?crit :> Dear,
>
>
> I am using the R package SNPRelate but I found an error when I run the
> following command. Do you know what might be the problem? Thanks in
> advance.
>
>
>> vcf.fn <-
system.file("extdata","str.vcf",package="SNPRelate")
>> snpgdsVCF2GDS(vcf.fn,"test.gds")
>
>
> Start snpgdsVCF2GDS ...
> Extracting bi-allelic and polymorhpic SNPs.
> Scanning ...
> file: D:/Program
Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf
> Error in scan.vcf.marker(fn, method) :
> The file (D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf)
has different numbers of columns.
>
>
> Best regrads
>
>
> --
> Dr. Ye SUN
> Key Laboratory of Plant Resources Conservation and Sustainable Utilization
> South China Botanical Garden, Chinese Academy of Sciences
> Xingke Road 723,Tianhe District, Guangzhou 510650, PR China
>
>
>
>
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>
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