search for: snprelate

Dear, I am using the R package SNPRelate but I found an error when I run the following command. Do you know what might be the problem? Thanks in advance. > vcf.fn <- system.file("extdata","str.vcf",package="SNPRelate") > snpgdsVCF2GDS(vcf.fn,"test.gds") Start snpgdsVCF2GDS ... E...

Dear all, I am using the R package SNPRelate but I found an error when I run the following command. Do you know what might be the problem? Thanks in advance. > vcf.fn <- system.file("extdata", "sequence.vcf", package="SNPRelate") > snpgdsVCF2GDS(vcf.fn, "test.gds") Start snpgdsVCF2GDS ......

Hi, Following my earlier posts about having problems performing a PCA, I have worked out what the problem is. The problem lies within the PLINK to gds conversion. It seems as though the SNPs are imported as "samples" and in turn, the samples are recognised as SNPs: >snpsgdsSummary("chr2L") Some values of snp.position are invalid (should be > 0)! Some values of

....36), readBrukerFlexData (1.2.5), readBrukerFlexData (1.2.7), readMzXmlData (2.2.1), REGENT (1.0.4), regress (1.3-7), relevent (1.0-2), Renext (2.0-0), rmongodb (1.0.3), rngSetSeed (0.2-3), RODBC (1.3-5), RSEIS (3.0-1), rworldmap (0.1300), sampleSelection (0.7-0), skmeans (0.2-1), Snowball (0.0-8), SNPRelate (0.9.3), soiltexture (1.2.9), soobench (1.0-73), sp (0.9-97), SpatioTemporal (0.9.2), SPOT (1.0.2257), support.CEs (0.2-1), tabuSearch (1.1), tdthap (1.1-3), textir (1.8-2), timsac (1.2.6), tm.plugin.dc (0.2-1), twang (1.2-5), XLConnect (0.1-9) New reviews ----------- * quantmod, by atomicules...

CRAN (and crantastic) updates this week New packages ------------ * disclapmix (0.1) Maintainer: Mikkel Meyer Andersen Author(s): Mikkel Meyer Andersen and Poul Svante Eriksen License: GPL-2 http://crantastic.org/packages/disclapmix disclapmix makes inference in a mixture of Discrete Laplace distributions using the EM algorithm. * EstSimPDMP (1.1) Maintainer: Unknown Author(s):