Displaying 2 results from an estimated 2 matches for "snpgdsvcf2gds".
2013 Jan 22
2
SNPRelate package error
Dear,
I am using the R package SNPRelate but I found an error when I run the
following command. Do you know what might be the problem? Thanks in
advance.
> vcf.fn <- system.file("extdata","str.vcf",package="SNPRelate")
> snpgdsVCF2GDS(vcf.fn,"test.gds")
Start snpgdsVCF2GDS ...
Extracting bi-allelic and polymorhpic SNPs.
Scanning ...
file: D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf
Error in scan.vcf.marker(fn, method) :
The file (D:/Program Files/R/R-2.14.2/library/SNPRelat...
2012 Sep 12
1
SNPRelate package error
Dear all,
I am using the R package SNPRelate but I found an error when I run the following command. Do you know what might be the problem? Thanks in advance.
> vcf.fn <- system.file("extdata", "sequence.vcf", package="SNPRelate")
> snpgdsVCF2GDS(vcf.fn, "test.gds")
Start snpgdsVCF2GDS ...
Open C:/Users/med-jft/Documents/R/win-library/2.15/SNPRelate/extdata/sequence.vcf
Scanning ...
Error in createfn.gds(outfn.gds) :
Can not create file 'test.gds'. Access is denied.
> sessionInfo()
R version 2.15.0...