Hello dear R help group, I would like to download the tRNA data on: http://gtrnadb.ucsc.edu/download.html And then import it into R. Can anyone direct me as to how to do so? Thanks, Tal ---------------------------------------------- My contact information: Tal Galili E-mail: Tal.Galili@gmail.com Phone number: 972-52-7275845 FaceBook: Tal Galili My Blogs: http://www.talgalili.com (Web and general, Hebrew) http://www.biostatistics.co.il (Statistics, Hebrew) http://www.r-statistics.com/ (Statistics,R, English) ---------------------------------------------- My contact information: Tal Galili E-mail: Tal.Galili@gmail.com Phone number: 972-52-7275845 FaceBook: Tal Galili My Blogs: http://www.talgalili.com (Web and general, Hebrew) http://www.biostatistics.co.il (Statistics, Hebrew) http://www.r-statistics.com/ (Statistics,R, English) [[alternative HTML version deleted]]
readFASTA in the BioConductor Biostrings package. b On Nov 18, 2009, at 8:14 AM, Tal Galili wrote:> Hello dear R help group, > I would like to download the tRNA data on: > http://gtrnadb.ucsc.edu/download.html > > And then import it into R. > > Can anyone direct me as to how to do so? > > > Thanks, > Tal > > > > > ---------------------------------------------- > > > My contact information: > Tal Galili > E-mail: Tal.Galili at gmail.com > Phone number: 972-52-7275845 > FaceBook: Tal Galili > My Blogs: > http://www.talgalili.com (Web and general, Hebrew) > http://www.biostatistics.co.il (Statistics, Hebrew) > http://www.r-statistics.com/ (Statistics,R, English) > > > ---------------------------------------------- > > > My contact information: > Tal Galili > E-mail: Tal.Galili at gmail.com > Phone number: 972-52-7275845 > FaceBook: Tal Galili > My Blogs: > http://www.talgalili.com (Web and general, Hebrew) > http://www.biostatistics.co.il (Statistics, Hebrew) > http://www.r-statistics.com/ (Statistics,R, English) > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.
Hi Tal, Tal Galili wrote:> Hello dear R help group, > I would like to download the tRNA data on: > http://gtrnadb.ucsc.edu/download.html > > And then import it into R. > > Can anyone direct me as to how to do so?You probably want the readFASTA() function in Biostrings, which is part of Bioconductor. There are several packages in BioC that are useful for doing things with sequence data once read in, depending on what your purpose is. Further questions should probably be directed to the BioC listserv <bioconductor at stat.math.ethz.ch>. Best, Jim> > > Thanks, > Tal > > > > > ---------------------------------------------- > > > My contact information: > Tal Galili > E-mail: Tal.Galili at gmail.com > Phone number: 972-52-7275845 > FaceBook: Tal Galili > My Blogs: > http://www.talgalili.com (Web and general, Hebrew) > http://www.biostatistics.co.il (Statistics, Hebrew) > http://www.r-statistics.com/ (Statistics,R, English) > > > ---------------------------------------------- > > > My contact information: > Tal Galili > E-mail: Tal.Galili at gmail.com > Phone number: 972-52-7275845 > FaceBook: Tal Galili > My Blogs: > http://www.talgalili.com (Web and general, Hebrew) > http://www.biostatistics.co.il (Statistics, Hebrew) > http://www.r-statistics.com/ (Statistics,R, English) > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.-- James W. MacDonald, M.S. Biostatistician Douglas Lab University of Michigan Department of Human Genetics 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826
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