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Hi, I was installing hundreds of packages on a machine with a single call to install.packages() and after a long time the call to install.packages() finally returned with the following warnings and errors: Warning messages: 1: packages ?hgu133aprobe?, ?hgu95av2.db?, ?BSgenome.Celegans.UCSC.ce2?, ?BSgenome.Mmusculus.UCSC.mm10?, ?BSgenome.Dmelanogaster.UCSC.dm3.masked?, ?BSgenome.Hsapiens.UCSC.hg18.masked?, ?BSgenome.Hsapiens.UCSC.hg19.masked?, ?BSgenome.Mmusculus.UCSC.mm9.masked?, ?BSgenome.Scerevisiae.UCSC.sacCer2?, ?BSgenome.Hsapiens.NCBI.GRCh38?, ?BSgenome.Rnorvegicus.UCSC.r...

...rm mounts with krb5. When I try to access even an already-mounted NFS directory to which I have permission, gssproxy complains: Jul 10 08:55:51 smb gssproxy: gssproxy[1469]: (OID: { 1 2 840 113554 1 2 2 }) Unspecified GSS failure. Minor code may provide more information, Client 'host/smb.soe.ucsc.edu at AD.SOE.UCSC.EDU' not found in Kerberos database We have an existing Samba 4.8.3 server that is configured to use the ldap backend and does not run winbind, which gives us the desired behavior. I was hoping to replace that server because it has its own issues, but with the ad backend si...

...eady-mounted NFS directory to which I have permission, > > gssproxy complains: > > > > Jul 10 08:55:51 smb gssproxy: gssproxy[1469]: (OID: { 1 2 840 113554 1 2 > 2 > > }) Unspecified GSS failure. Minor code may provide more information, > > Client 'host/smb.soe.ucsc.edu at AD.SOE.UCSC.EDU' not found in Kerberos > > database > > It would complain, GSS is a kerberos thing, so you need a ticket for it. > > Can you kerberise NFS ? > Kerberizing NFS is something we've wanted to do for a while as a way out of our low ID issue but wasn...

...ix group', are these groups in AD and how > are they named ? > > Rowland > > > > -- > To unsubscribe from this list go to the following URL and read the > instructions: https://lists.samba.org/mailman/options/samba > -- Eric Shell BSOE Technical Staff eshell at ucsc.edu 831 459 4919 Baskin Engineering, Room 313

Hello, I'm trying to find if the access within a loop body is using the loop induction variable, and to get the start and end indices of the loop. for(int i = start; i < end; i++) { A[i] = 0; } Let's say, I want to replace this with a function call 'zero(A,start, end)' How can I get the Value for start and end, and see if the index is same as loop induction variable?

...m and libldap among other things. Can someone tell me if pam_smbpass is using the SAM DB API? If pam_smbpass is hardwired for the smbpasswd file, that would explain my troubles. If it is using the SAM DB API, can anyone give me any direction? Ross Patterson Programmer/Analyst 831-459-2792 rossp@ucsc.edu 1156 High St, Barn G, PP&C Santa Cruz, CA 95064

...to backup data between two machines, there reports some errors: >./bin/rsync -avz 192.168.1.30::web ./backup-3000/ rsync: failed to connect to 192.168.1.30: Connection refused rsync error: error in socket IO (code 10) at clientserver.c(89) another try: >./bin/rsync -avz 192.168.1.30:/BGI/UCSC-mirror/bin/rsync-2.5.4/man ./backup-3000/ rshd: 0826-813 Permission is denied. rsync: connection unexpectedly closed (0 bytes read so far) rsync error: error in rsync protocol data stream (code 12) at io.c(151) In fact, I have set up the rsyncd.conf file in the 192.168.1.30 as the following, I...

...s are running 3.6.23, both from rpms available from either the CentOS 6 or 7 repos (samba 4 on CentOS 7, samba 3 on CentOS 6). Here's the smb.conf used on the two samba 4 servers: [global] > workgroup = BSOE > server string = SAMBA-01 > netbios name = SAMBA-01 > realm = ad.soe.ucsc.edu > security = ads > log file = /var/log/samba.log > log level = 2 > browseable = yes > read only = no > local master = no > load printers = no > preserve case = yes > case sensitive = yes > wins support = no > passdb backend = tdbsam > printing = b...

Suddenly as of this morning, none of my users can authenticate to samba because nss_ldap is producing cryptic errors. Nothing has changed on either the LDAP server or the Samba server. Looks like this in /var/log/messages: Aug 11 11:19:29 edgar smbd[8394]: nss_ldap: could not soft reconnect to LDAP server - Server is unavailable Yet, the LDAP server IS available, and happily chirping away

Dear all: In fact, even I add the user in the command, the rsync`s error is still appearing: >./bin/rsync -avz tong@192.168.1.30:/BGI/UCSC-mirror/bin/rsync-2.5.4/man ./backup-3000/ rshd: 0826-813 Permission is denied. rsync: connection unexpectedly closed (0 bytes read so far) rsync error: error in rsync protocol data stream (code 12) at io.c(151) another try: >./bin/rsync -avz tong@192.168.1.30::web ./backup-3000/ rsync: failed t...

Ugh, I knew I forgot something. Here is smb.conf: --- [global] kerberos method = system keytab template homedir = /soe/%U workgroup = BSOE template shell = /bin/bash security = ads realm = AD.SOE.UCSC.EDU idmap config BSOE : schema_mode = rfc2307 idmap config BSOE : range = 100-999999 idmap config BSOE : backend = ad idmap config BSOE : unix_nss_info = yes idmap config BSOE : unix_primary_group = yes idmap config * : range = 10000000-10999999 idmap config * : backend = tdb winbind use default do...

I am downloading say 100 files from ucsc website and storing it into dest folder. download.file function create a file in destination folder even if the file is not present which is something I dont want. So I wrote if condition to remove the file if the download function has non zero value. Now it exits when there is an error or file no...

Hello dear R help group, I would like to download the tRNA data on: http://gtrnadb.ucsc.edu/download.html And then import it into R. Can anyone direct me as to how to do so? Thanks, Tal ---------------------------------------------- My contact information: Tal Galili E-mail: Tal.Galili@gmail.com Phone number: 972-52-7275845 FaceBook: Tal Galili My Blogs: http://www.talgalili...

...U, @admin write list = %U, @admin create mask = 0600 directory mask = 0700 browseable = No It seems that the %U variable, causes Samba to do a lookup_global_sam_name which fails. [root@fileserver]# smbclient -Ujoeblow '\\edgar.library.ucsc.edu\home' xxxxxxxx tree connect failed: NT_STATUS_ACCESS_DENIED Here's the relevant section of the log: passdb/pdb_ldap.c:init_sam_from_ldap(545) init_sam_from_ldap: Entry found for user: joeblow passdb/pdb_ldap.c:init_group_from_ldap(2158) init_group_f...

...t; Ugh, I knew I forgot something. Here is smb.conf: > > > > --- > > > > [global] > > kerberos method = system keytab > > template homedir = /soe/%U > > workgroup = BSOE > > template shell = /bin/bash > > security = ads > > realm = AD.SOE.UCSC.EDU > > idmap config BSOE : schema_mode = rfc2307 > > idmap config BSOE : range = 100-999999 > > idmap config BSOE : backend = ad > > idmap config BSOE : unix_nss_info = yes > > idmap config BSOE : unix_primary_group = yes > > idmap config * : range = 10000000-10...

...to speed up the transfer? The command line I'm using is: /usr/local/bin/rsync --stats --rsh=/usr/bin/rsh --recursive --delete --one-file-system --xattrs --links --hard-links --times --perms --owner --group --exclude=.zfs /foo/bar root at remote:/foo/bar Thanks! -- Tim Gustafson tjg at soe.ucsc.edu 831-459-5354 Baskin Engineering, Room 313A

...de{Y16846}} \item{\code{chrom}}{a factor with levels \code{chr1} \code{chr2} \code{chr3}} \item{\code{strand}}{a factor with levels \code{-} \code{+}} \item{\code{txStart}}{a numeric vector} \item{\code{txEnd}}{a numeric vector} } } \usage{data(KG)} \format{data frame} \source{The UCSC genome browser (http://genome.ucsc.edu).} \keyword{datasets} PACKAGE/man/Einter.Rd: \name{Einter} \docType{data} \alias{intensities} \title{Sample intensities for human promoter tiling array. } \description{ Einter is a data frame consisting of 3 position information columns (Unique ID, Start posi...

Hi Jim I am trying to prepare a bed file to load as accustom track on the UCSC genome browser. I have a data frame that looks like the one below. > x V1 V2 V3 1 chr1 11255 55 2 chr1 11320 29 3 chr1 11400 45 4 chr2 21680 35 5 chr2 21750 84 6 chr2 21820 29 7 chr2 31890 46 8 chr3 32100 29 9 chr3 52380 29 10 chr3 66450 46 I would like to insert the following 4 lines at...

I set up a test server about a year ago to try this and gave up since it didn't seem that the processes were quite yet in place to do it .. I am evaluating the potential for Samba and Linux accounts (including postfix email accounts) to share the same passwords and have a process in place to encourage users to change their passwords and try to prevent esay to crack passwords Could someone

...empts were failing. Workstations in the domains were still able to authenticate, however, and I verified that the DNS records were still correct. The SRV records were all in place and the domain controllers' host names were resolving. On Wed, Jun 22, 2016 at 9:44 AM, Eric Shell <eshell at ucsc.edu> wrote: > Thanks for the quick replies. > > One domain is at Windows Server 2008 functional level, and the other is > Windows Server 2012 R2. The samba 4 servers are running 4.2.10 and the > samba 3 servers are running 3.6.23, both from rpms available from either > the Ce...