Displaying 2 results from an estimated 2 matches for "gtrnadb".
2009 Nov 18
2
Importing tRNA data into R ?
Hello dear R help group,
I would like to download the tRNA data on:
http://gtrnadb.ucsc.edu/download.html
And then import it into R.
Can anyone direct me as to how to do so?
Thanks,
Tal
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My contact information:
Tal Galili
E-mail: Tal.Galili@gmail.com
Phone number: 972-52-7275845
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2010 Mar 12
0
How (and where) to get aligned tRNA sequences (and import/align it using R)
...aligned.
My questions are:
1) What resources can I use for the data.
2) What commands might help me with the import/alignment.
So far, I found two nice repositories that holds such data:
1) <http://trnadb.bioinf.uni-leipzig.de/Result>
http://trnadb.bioinf.uni-leipzig.de/Result
2) <http://gtrnadb.ucsc.edu/download.html>
http://gtrnadb.ucsc.edu/download.html
And also the readFASTA command from Biostrings, that does basic importing
of the data into R.
My problem still remains with *how to handle the alignment* of the tRNA.
Since I am not from the field, I might be missing a very basic...