Peng Yu
2009-Oct-28 00:44 UTC
[R] [BioC] Is there a package similar to mogene10stprobeset.db by for Affymetrix Exon Arrays?
mogene10stprobeset.db is generated with AnnotationDbi for mouse gene array. I don't find a package that seems generated by AnnotationDbi for exon arrays on the webpage you mentioned. Is it correct? On Tue, Oct 27, 2009 at 7:00 PM, Marc Carlson <mcarlson at fhcrc.org> wrote:> Hi Peng, > > I am not completely clear from your post what you want. ?But most of our > annotation packages can be found here: > > http://www.bioconductor.org/packages/devel/data/annotation/ > > If you don't find what you want, and you have gene accessions mapped > onto probes (something that should still be possible for an > exon-oriented platform), then you can use SQLForge in AnnotationDbi to > generate an annotation package. ?To do so see the SQLForge vignette > which can be found in the AnnotationDbi package right here: > > http://www.bioconductor.org/packages/devel/bioc/html/AnnotationDbi.html > > > ?Marc > > > > > Peng Yu wrote: >> There are gene level annotation for Gene Array mogene10stprobeset.db. >> I'm wondering if there are any package available for Exon Arrays? >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> > >