colmog
2012-Jun-29 10:45 UTC
[R] Problem on loading annotation for BioC - error: RS-DBI driver: (error in statement: near "s": syntax error)
I'm trying to load an annotation file on a new R installation on a new machine (Win 7 x64, R 2.15.0) Loading this package fails; I've tried re-installing R and BioC from scratch, including all new packages etc, to no avail. Any ideas?> require("hugene10sttranscriptcluster.db")Loading required package: hugene10sttranscriptcluster.db Loading required package: AnnotationDbi Loading required package: BiocGenerics Attaching package: ?BiocGenerics? The following object(s) are masked from ?package:stats?: xtabs The following object(s) are masked from ?package:base?: anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get, intersect, lapply, Map, mapply, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rbind, Reduce, rep.int, rownames, sapply, setdiff, table, tapply, union, unique Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: org.Hs.eg.db Loading required package: DBI Error : .onLoad failed in loadNamespace() for 'hugene10sttranscriptcluster.db', details: call: sqliteExecStatement(con, statement, bind.data) error: RS-DBI driver: (error in statement: near "s": syntax error) -- View this message in context: http://r.789695.n4.nabble.com/Problem-on-loading-annotation-for-BioC-error-RS-DBI-driver-error-in-statement-near-s-syntax-error-tp4634860.html Sent from the R help mailing list archive at Nabble.com.
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