R help - Mar 2002 - How do you organize the objects you produced?

Hello!

It would be nice to hear how you organize the R-objects you produced. I
found almost nothing about that neither in the R-manuals nor in two books
about S.

For example I am trying to find out, how to load the functions that I have
written and that are now saved in a .txt-file in a Windows directory. Is
copying and pasting it to the RGui console really the only feasible way to
do that? Constructing packages, similar to the ones included in the basic R
system, is probably too complicated for a beginner like me, isn?t it?

I wonder why manuals and books just explain how to write functions, but not
how to keep and to reload them. I have got a similar problem with my data. I
understood (mistakenly?) that one can attach a Windows directory to the
search path, so that every file inside this directory is known by R, without
further need to specify the path. So I tried:
> attach("C:\\Temp",2)
Error in load(file, envir) : unable to open file
> search()
[1] ".GlobalEnv"    "file:C:\\Temp"
"package:ctest" "Autoloads"
[5] "package:base"


Temp is a directory and includes a file named test.dat. I went on:
> file <- read.table("test.dat", header = TRUE, fill = TRUE)
Error in file(file, "r") : cannot open file `test.dat'


This last command only works when I use the RGui-menu to change my working
directory to Temp.

I feel I am using R as if cutting hair with a spoon. Do you know a nicer way
to use it?

Michael


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"Rikkoe at softhome.net" wrote:
> 
> Hello!
> 
> It would be nice to hear how you organize the R-objects you produced. I
> found almost nothing about that neither in the R-manuals nor in two books
> about S.
> 
> For example I am trying to find out, how to load the functions that I have
> written and that are now saved in a .txt-file in a Windows directory. Is
> copying and pasting it to the RGui console really the only feasible way to
> do that? Constructing packages, similar to the ones included in the basic R
> system, is probably too complicated for a beginner like me, isn?t it?
Well, I wouldn't suggest to start learning R by creating your own
packages. But after some experiences it's a nice thing.
You are looking for 
 source()

It's mentioned in section 1.10 of "An Introduction to R" (this
manual is
really worth reading it completely; hint, hint!).

> I wonder why manuals and books just explain how to write functions, but not
> how to keep and to reload them. I have got a similar problem with my data.
I
> understood (mistakenly?) that one can attach a Windows directory to the
> search path, so that every file inside this directory is known by R,
without
> further need to specify the path. 
Indeed, mistakenly. 
>From ?attach:
"Usage: attach(what, pos = 2, name = deparse(substitute(what)))
Arguments: what, ``database''. This may currently be a data.frame or
list or a R data file created with save."

You can set your working directory (see below).

> So I tried:
> 
> > attach("C:\\Temp",2)
> Error in load(file, envir) : unable to open file
> > search()
> [1] ".GlobalEnv"    "file:C:\\Temp"
"package:ctest" "Autoloads"
> [5] "package:base"
>
>
> Temp is a directory and includes a file named test.dat. I went on:
Well, as cited above: it's a directory, but neither a data.frame nor a
list nor a R data file.
 
> > file <- read.table("test.dat", header = TRUE, fill =
TRUE)
> Error in file(file, "r") : cannot open file `test.dat'
> 
> This last command only works when I use the RGui-menu to change my working
> directory to Temp.
> 
> I feel I am using R as if cutting hair with a spoon. Do you know a nicer
way
> to use it?
Instead of using the GUI, you can set your working directory with
 setwd("c:/temp")
Additionally, read.table() [and any other function] also works for whole
paths, e.g.: "c:/temp/test.dat".

Uwe Ligges
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On Mon, 25 Mar 2002, Rikkoe at softhome.net wrote:
> It would be nice to hear how you organize the R-objects you produced. I
> found almost nothing about that neither in the R-manuals nor in two books
> about S.
They do explain about packages.
> For example I am trying to find out, how to load the functions that I have
> written and that are now saved in a .txt-file in a Windows directory. Is
> copying and pasting it to the RGui console really the only feasible way to
> do that? Constructing packages, similar to the ones included in the basic R
> system, is probably too complicated for a beginner like me, isn´t it?
No.
> I wonder why manuals and books just explain how to write functions, but not
> how to keep and to reload them. I have got a similar problem with my data.
I
Um, a book called `S Programming' does.

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272860 (secr)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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