R help - Jun 2010 - Is there any function to read genbank flat files.

Hi
I am trying to read genbank est flat files. Is there any function in R to do
that. I was looking for something similar to SeqIO.parse(input_handle,
"genbank")  in bioPython that convert the genebank sequence into fasta
sequence.
(One option is to call biopython from R but I am not familiar with python
functions so I want to avoid that and I am keeping it as last resort)
Thanks and regards.
--Fahim



-- 
Fahim Mohammad
Bioinforformatics Lab
University of Louisville
Louisville, KY, USA
Ph:  +1-502-409-1167

	[[alternative HTML version deleted]]

Hi,

I think it's better to ask on Bioconductor mailing list.

Regards

On Jun 16, 6:19?pm, Fahim Md <fahim... at gmail.com>
wrote:
> Hi
> I am trying to read genbank est flat files. Is there any function in R to
do
> that. I was looking for something similar to SeqIO.parse(input_handle,
> "genbank") ?in bioPython that convert the genebank sequence into
fasta
> sequence.
> (One option is to call biopython from R but I am not familiar with python
> functions so I want to avoid that and I am keeping it as last resort)
> Thanks and regards.
> --Fahim
>
> --
> Fahim Mohammad
> Bioinforformatics Lab
> University of Louisville
> Louisville, KY, USA
> Ph: ?+1-502-409-1167
>
> ? ? ? ? [[alternative HTML version deleted]]
>
> ______________________________________________
> R-h... at r-project.org mailing
listhttps://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guidehttp://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.