R help - Jun 1997 - R-beta: patch 2

Perhaps I missed something obvious, but when I applied patch 2 and then
recompiled R-0.49, I found that the objects such as glm.fit that were
supposed to be updated still had their original definitions. After some
hair-pulling, I remembered that patch saves a backup copy of the original
files it changes. Because of the way the makefile for the system database
is structured, both the new files and the original files in
$R_HOME/src/library/base/funs were being read into the system base file,
$R_HOME/library/base. Since, for example, glm.orig is listed after glm,
then all the original definitions superceded the new definitions.

After moving all the *.orig files out of $R_HOME/library/base/funs and
re-making the system database, the new object definitions were activated.

L. Ammann
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-r-help
mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To: r-help-request at
stat.math.ethz.ch
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=

Larry P Ammann <ammann at utdallas.edu> writes:

> files it changes. Because of the way the makefile for the system database
> is structured, both the new files and the original files in
> $R_HOME/src/library/base/funs were being read into the system base file,
> $R_HOME/library/base. Since, for example, glm.orig is listed after glm,
> then all the original definitions superceded the new definitions.
*blink*

Holy smoke... 

$ more src/library/base/Makefile 
base:
        @echo building system base library
        @cat funs/[a-z]* |sed '/^[      ]*$$/d' 
>../../../library/base
             ==========
Make that 

	@ls funs/[a-z]* | grep -v '\.orig$' | xargs cat | sed .....
or
	@cat `ls funs/[a-z]* | grep -v '\.orig$'` | sed ....

will ya', Ross?

-- 
   O__  ---- Peter Dalgaard             Blegdamsvej 3  
  c/ /'_ --- Dept. of Biostatistics     2200 Cph. N   
 (*) \(*) -- University of Copenhagen   Denmark      Ph: (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)             FAX: (+45) 35327907
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-r-help
mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To: r-help-request at
stat.math.ethz.ch
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=

First of all, hearty thanks to all for undertaking this project; it
looks like it will solve many problems for me in the future (cost of
S-PLUS, lack of a Linux port, unresponsiveness of StatSci/MathSoft, ...) I
would like to contribute in some way, I will look around for a project
that's about my size.

  A few questions/comments about minor S-PLUS/R inconsistencies:

  1) complex() in S-PLUS also takes optional arguments modulus and
argument (instead of re and im): I just wrote a little wrapper program

  Complex _ function(modulus=1, argument=0) {
     complex(real=modulus*cos(argument),imag=modulus*sin(argument))
  }

  but perhaps this change should be made in the C code itself (I would
  consider doing it myself as soon as I've gotten a little more familiar
  with the way the C code works).

  2. In S-PLUS, if Z is a matrix,  image(Z) works -- in R, you get a
  missing argument error and have to say image(z=Z); again, not a big deal
  and (presumably) fairly easy to fix.

  3.. Any plans to implement acf(), etc.?  (I may get around to writing my
    own.)

  4. Any plans for 3-D graphics (persp() and friends)?  This is a place
   where it would presumably be very easy to do better than S-PLUS (at
   least than release 3.1, which is what I'm using), where 3-D graphics
   are very clearly old and clunky.  I guess a fair amount of thought
   should go into the design phase, though ...

 -- in future, should I bother sending comments like this (for which I
don't really need help) to the help-list, or just to the R address?


Benjamin Bolker          Dep't of Ecology and Evolutionary Biology,
ben at eno.princeton.edu    Princeton University
tel: (609) 258-6886,     fax: (609) 258-1334

=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-r-help
mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To: r-help-request at
stat.math.ethz.ch
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=