search for: r_home

...ich contain object files from the Fortran 95 compiler SHLIB_FCLDFLAGS special flags used by SHLIB_FCLD I did not know what to set for these and accepted whatever the defaults were. I ended up with shared-libraries which are as follows:- $R_HOME/lib/{libRblas.so,libRlapack.so } i.e. with the prefix 'lib' and the following shared-libraries without the 'lib' prefix. $R_HOME/modules/{R_X11.so,internet.so,lapack.so,vfonts.so } $R_HOME/library/cluster/libs/cluster.so $R_HOME/library/foreign/libs/foreign.so $R_HOME/library...

Hi, I'ma having some troubles installing R under Unix. As it is written in the "how to install R" the ./configure passed on but when I type make I recieve this error message : gmake[1]: Entering directory `/usr/local/R_HOME/R-2.4.0/m4' gmake[1]: Nothing to be done for `R'. gmake[1]: Leaving directory `/usr/local/R_HOME/R-2.4.0/m4' gmake[1]: Entering directory `/usr/local/R_HOME/R-2.4.0/tools' gmake[1]: Nothing to be done for `R'. gmake[1]: Leaving directory `/usr/local/R_HOME/R-2.4.0/tools' gma...

Hello, I have come across two separate packages that have a Makefile in inst/doc which use the R_HOME variable. In both cases, the path to R_HOME gets munged in such a way that commands that include R_HOME fail on Windows: For example, one Makefile, for the xmapcore package ( https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xmapcore/username/password: readonly) has this: R=${R_HOME}/b...

...hat appears to be a glitch in the current distribution, or in its installation on our system. I've traced it, and found a work- around. Is this normal? Is there a cleaner solution? The problem: During a package installation, the warning message "WARNING: ignoring environment value of R_HOME" from line 31 of <R_HOME>/bin/R is accidentally spliced into the CLINK_CPPFLAGS variable at line 606 of <R_HOME>/bin/ INSTALL. This prevents the compilation C files. Please note that I have not set the R_HOME environment variable; it is undefined in my shell. - Here are lines 29-...

...39;. ... make[1]: Entering directory `/linux/biolo/R_fedora/R-2.13.1/src/library' make[2]: Entering directory `/linux/biolo/R_fedora/R-2.13.1/src/library' installing parsed Rd make[3]: Entering directory `/linux/biolo/R_fedora/R-2.13.1/src/library' WARNING: ignoring environment value of R_HOME base WARNING: ignoring environment value of R_HOME stats WARNING: ignoring environment value of R_HOME utils WARNING: ignoring environment value of R_HOME methods WARNING: ignoring environment value of R_HOME graphics WARNING: ignoring environment value of R_HOME grDevices WARNING: igno...

...h a number of packages which use R/Rscript to run R code in configure or makefiles. (a) You must give a full path: there need be no version of R in the path, and if there is it might not be the version/build of R under which package installation is being done. So the general form is to use ${R_HOME}/bin/R to select the right version. And since ${R_HOME} might contain spaces, you need something like "${R_HOME}/bin/R". There appear to be bare uses of Rscript in Rcpp RQuantLib bifactorial mvabund, of bare R in ROracle pgfSweave rcom and many more packages without quotes. (b) The...

When the R_HOME environment variable is set, R issues a warning messages when it starts up. When doing 'make check' this causes the check for eval-etc.R to fail: [...] make[3]: Leaving directory `/Volumes/app/R/src/R-1.4.0_patched_2002-01-24/tests' running strict specific tests make[3]: Entering...

...R-2.11.1/src/library/Recommended' begin installing recommended package MASS /usrX/JunqueYard/R-2.11.1/bin/Rcmd: @: not found gnumake[2]: *** [MASS.ts] Error 1 gnumake[2]: Leaving directory `/usrX/JunqueYard/R-2.11.1/src/library/Recommended' Rcmd for this build: #!/usr/local/bin/bash # # ${R_HOME}/bin/Rcmd ## Shell script wrapper for all R CMD commands. ## For internal use only. R_CMD="${R_HOME}/bin/Rcmd" export R_CMD R_VERSION=2.11.1 export R_VERSION R_OSTYPE="unix" export R_OSTYPE ## Add 'share/perl' to the perl library path. if test -n "${PERL5LIB}&q...

...blem, and verified that the attached fix resolves the problem with R 2.10.1. To duplicate the problem: 1. Create a large directory: echo `seq 80` | tr ' ' '_' | sed -e 's|\(.*\)|/tmp/\1/\1/\1|g' | xargs mkdir -p 2. Copy R into it 3. Launch R from that directory / with that R_HOME You don't be able to load the base module or run other functions. I have prepared 2 patches, one against the trunk in Subversion : http://people.FreeBSD.org/~murray/maxpath-svn-trunk.patch And one against the 2.10 release branch : http://people.FreeBSD.org/~murray/maxpath-svn-2-10-branch.pat...

..._back(1); a.push_back(2); // std::for_each( a.begin(), a.end(), _1 = 1); boost::thread t(thread); t.join(); return wrap(a); } ------------------------------- Makevars.win (try 1: try to find if there is a file called libboost_thread*) ------------------------------- ## Use the R_HOME indirection to support installations of multiple R version ## PKG_CXXFLAGS = `$(R_HOME)/bin/Rscript -e "Rcpp:::CxxFlags()"` PKG_CPPFLAGS = -I${BOOSTLIB} PKG_LIBS = $(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript.exe" -e "Rcpp:::LdFlags()") ${BOOSTLIB}/lib/libboost_thread*...

On 7 December 2017 at 17:56, Tomas Kalibera wrote: | | An update on this. Writing R Extensions does not recommend to have a | space character in R_HOME. This means that on Windows one either should | have SFN enabled (which is still the common case), or install into a | directory that does not have a space in its name (so specifically not | into "Program Files"). This recommendation unfortunately needs to stay | for now. | | WRE rec...

...out to the cluster nodes. This works fine on some of the machines, but on others the directory structure is mapped differently, so that when I try to run R, it can't be found, I can get around this by running /net/mp1/space/local/bin/R which gets me to R binary, but then I get the message: R_HOME (`/usr/local/lib/R') not found. I tried setting the environment variable R_HOME to the proper library location but then I get the message: WARNING: ignoring environment value of R_HOME R_HOME (`/usr/local/lib/R') not found I know the solution is to get the directory structure remapped,...

...cted this command: > X11(display = "", width = 7, height = 7, pointsize = 12, gamma = 1, colortype = getOption("X11colortype"), maxcubesize = 256) with no resistance, but no change in the result. I looked up files containing x11 or X11 on my systen and found: /usr/local/R_HOME/R-1.1.0/src/unix/X11 /usr/local/R_HOME/R-1.1.0/src/unix/X11/devX11.c /usr/local/R_HOME/R-1.1.0/src/unix/X11/devX11.d /usr/local/R_HOME/R-1.1.0/src/unix/X11/devX11.o /usr/local/R_HOME/R-1.1.0/bin/R_X11.so /usr/local/R_HOME/R-1.1.0/src/library/base/R/unix/x11.R /usr/local/R_HOME/R-1.1.0/src/library/b...

Dear All, I would like to reset default R_HOME PATH for R.3.1.3. I installed R-devel in /usr/local/R-devel but I can't install many packages as tcltk. I uninstalled R-devel and I would reuse R.3.1.3 but the PATH is remaining to /usr/local/R-devel. I touch ~.Renviron file with R_HOME=/usr/lib/R/bin/ RSTUDIO_R_HOME=/usr/lib/R/bin/ R_LIBS=...

...manuals configure: WARNING: you cannot build info or html versions of the R manuals configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: I could not determine a browser bash-2.0.5$make <SNIP> bash-20.5$ make check make[1]: Entering directory `/home/phineas/R_HOME/R-2.0.1/tests' make[2]: Entering directory `/home/phineas/R_HOME/R-2.0.1/tests' make[3]: Entering directory `/home/phineas/R_HOME/R-2.0.1/tests/Examples' make[4]: Entering directory `/home/phineas/R_HOME/R-2.0.1/tests/Examples' make[4]: Leaving directory `/home/phineas/R_HOME/R-2.0....

...ame -r. I am currently dependent on the development version of a package, so I'd like to get R-devel up and running if possible. I am sure there is more info I can provide, but before deluging the list with unnecessary output, I thought I would ask first what would be helpfu. Mark #Make R cd ~/R_HOME wget ftp://ftp.stat.math.ethz.ch/Software/R/R-devel.tar.gz tar -xzf R-devel.tar.gz cd ~/R_HOME/R-devel mkdir R-build cd R-build ../configure --prefix=/home/mkimpel/R_HOME/R-devel/R-build make all make install #####################################33 # console output mkimpel-XPS ~/R_HOME/R-devel/R-b...

..." /c RS-Oracle.c Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 12.00.8804 for 80x86 Copyright (C) Microsoft Corp 1984-1998. All rights reserved. RS-Oracle.c NMAKE : fatal error U1073: don't know how to make '\src\\gnuwin32\\Rdll.lib' Stop. Here is a copy of my Makefile: R_HOME = "C:\\Program Files\\R\\rw1090" ORACLE_HOME = C:\\oracle\\oracle92 SRC = RS-DBI.h RS-DBI.c RS-Oracle.h RS-Oracle.pc S4R.h RLIB = $(R_HOME)\\src\\gnuwin32\\Rdll.lib OBJ = RS-DBI.obj RS-Oracle.obj ## ## The Oracle ProC/C++ precompiler and options we need (these have worked ## on Linux,...

Hi! I do not have an Rprofile file in $R_HOME/etc, but I do have one in $R_HOME/library/base/R. I thought I could include a .First() function in a new $R_HOME/etc/Rprofile file for attaching a couple files which have custom "always needed" functions. But would the new $R_HOME/etc/Rprofile create a conflict with $R_HOME/library/base/R...

The make variable $(R_SHARE_DIR) seems to be available for use in tests/Makefile when running under Linux, but not Windows (R-2.6.2, R-2.6.1, R-2.7.0 alpha 2008-04-06, under Windows XP 64 bit, built locally for 32 bit). Is this intentional, or an oversight? Is it OK to use $(R_HOME)/share instead (seems to work OK)? I notice the following in /src/gnuwin32/front-ends/rcmdfn.c (from R-alpha 2008-04-06), which would suggest that the intention was that R_SHARE_DIR should be defined... (and I assume it would propagate to to be available in a Makefile.) int rcmdfn (int cmdarg...

(As a non-root/non-admin), I've just tried to figure out how to prevent a default $R_HOME/site-library/ to be added to the library path. The solution I found was to environment variable R_LIBS_SITE to ":" (preferably in ~/.Renviron). Note that setting R_LIBS_SITE to en empty string will cause it to fall back to using $R_HOME/site-library/. This "hack" is based on...