R devel - Mar 2009 - R does not compile any more on FreeBSD 8.0-CURRENT

On a recent FreeBSD 8.0-CURRENT (i386) building R (any version) breaks 
with the following messages:

----------------------------------------------------------------------
[...snip...]
gcc -std=gnu99 -I. -I../../src/include -I../../src/include 
-I/usr/local/include -DHAVE_CONFIG_H   -g -O2 -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include 
-I/usr/local/include -DHAVE_CONFIG_H   -g -O2 -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o 
fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o 
expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o 
gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o
bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o
dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o 
pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o
qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o
rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o
dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o 
dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o
dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o 
dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o 
rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o 
pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
config.status: creating src/unix/Makefile
make: /usr/local/R-devel/srcunix: No such file or directory
*** Error code 2

Stop in /usr/local/R-devel/src/unix.
*** Error code 1

Stop in /usr/local/R-devel/src.
*** Error code 1

Stop in /usr/local/R-devel.
----------------------------------------------------------------------

The path /usr/local/R-devel/srcunix does not exist but .../src/unix/ 
does. As a workaround I am able to do

cd src/unix
make
cd ../..
make

A second break with the same error does occur at 
/usr/local/R-devel/srcmain. Again this workaround works

cd src/main
make
cd ../..
make

Now the compilation finished without another break. What could be the 
reason for this 'path break'?  So long it seems that this error on 
FreeBSD 8.0-CURRENT only appears with R and no other third party software.

Potentially this is an error within latest FreeBSD code (?) and I have 
to ask on the FreeBSD mailing list. But before I wanted to ask on 
r-devel at . Perhaps someone here has an idea? Any hints are very welcome.

Thanks in advance,
Rainer Hurling

Rainer Hurling wrote:
> On a recent FreeBSD 8.0-CURRENT (i386) building R (any version)
> breaks with the following messages:
[...]

I run 7.1-RELEASE (amd64) so I cannot comment on any potential issues
with 8.0-CURRENT. On my machine the r-devel tarball (r48148) builds
without any problems but I use

./configure MAKE=gmake

Have you tried gmake?

h.
-- 
+---
| Hiroyuki Kawakatsu
| Business School, Dublin City University
| Dublin 9, Ireland. Tel +353 (0)1 700 7496

On 19.03.2009 10:37 (UTC+1), Hiroyuki Kawakatsu wrote:
> Rainer Hurling wrote:
>> On a recent FreeBSD 8.0-CURRENT (i386) building R (any version)
>> breaks with the following messages:
> [...]
> 
> I run 7.1-RELEASE (amd64) so I cannot comment on any potential issues
> with 8.0-CURRENT. On my machine the r-devel tarball (r48148) builds
> without any problems but I use
> 
> ./configure MAKE=gmake
> 
> Have you tried gmake?
> 
> h.
Yes, I tried gmake with same result. This behaviour is only with CURRENT 
from ~ 5th march 2009 on. Before that I have been able to compile with 
standard (bsd) make.

Thank you for this question,
Rainer

Todays (03/20/2009) update of FreeBSD 8.0-CURRENT solved the problem. 
The two pathes are resolving again. So building and installing R on 
CURRENT works again :-)

Thanks for your patience,
Rainer


On 17.03.2009 16:11 (UTC+1), Rainer Hurling wrote:
> On a recent FreeBSD 8.0-CURRENT (i386) building R (any version) breaks 
> with the following messages:
> 
> ----------------------------------------------------------------------
> [...snip...]
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include 
> -I/usr/local/include -DHAVE_CONFIG_H   -g -O2 -c wilcox.c -o wilcox.o
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include 
> -I/usr/local/include -DHAVE_CONFIG_H   -g -O2 -c signrank.c -o signrank.o
> rm -rf libnmath.a
> ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o 
> fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o 
> expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o 
> gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o
> bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o
> dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o 
> pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o
> qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o
> rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o
> dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o 
> dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o
> dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o 
> dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o 
> rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o 
> pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
> ranlib libnmath.a
> config.status: creating src/unix/Makefile
> make: /usr/local/R-devel/srcunix: No such file or directory
> *** Error code 2
> 
> Stop in /usr/local/R-devel/src/unix.
> *** Error code 1
> 
> Stop in /usr/local/R-devel/src.
> *** Error code 1
> 
> Stop in /usr/local/R-devel.
> ----------------------------------------------------------------------
> 
> The path /usr/local/R-devel/srcunix does not exist but .../src/unix/ 
> does. As a workaround I am able to do
> 
> cd src/unix
> make
> cd ../..
> make
> 
> A second break with the same error does occur at 
> /usr/local/R-devel/srcmain. Again this workaround works
> 
> cd src/main
> make
> cd ../..
> make
> 
> Now the compilation finished without another break. What could be the 
> reason for this 'path break'?  So long it seems that this error on 
> FreeBSD 8.0-CURRENT only appears with R and no other third party software.
> 
> Potentially this is an error within latest FreeBSD code (?) and I have 
> to ask on the FreeBSD mailing list. But before I wanted to ask on 
> r-devel at . Perhaps someone here has an idea? Any hints are very welcome.
> 
> Thanks in advance,
> Rainer Hurling