Mike Lawrence
2008-Dec-22 20:43 UTC
[R] Error compiling R.2.8.1 with gcc 4.4 on Mac OS 10.5.6
Hi all, I've encountered a build error with the latest R source (2.8.1). This is a relatively fresh install of OS Leopard (10.5.6), latest developer tools installed, gcc/g++/gfortran version 4.4 installed (via http://hpc.sourceforge.net/, after which I updated the gcc & g++ symlinks to link to the 4.4 versions; gfortran used the 4.4 version without updating the symlink). Ultimately I wanted to instalI pnmath, so as per a previous thread ( http://www.nabble.com/Parallel-R-tt18173953.html#a18196319) I built with: LIBS=-lgomp ./configure --with-blas='-framework vecLib' make -j4 The configure runs without a hitch, but make fails, throwing an error seemingly related to qdCocoa: making qdCocoa.d from qdCocoa.m <built-in>:0: internal compiler error: Abort trap Below is the output of configure, followed by the output of make (error is in the last 10 lines). Any suggestions to fix this would be greatly appreciated. mal:R-2.8.1 mike$ LIBS=-lgomp ./configure --with-blas='-framework vecLib' checking build system type... i386-apple-darwin9.6.0 checking host system type... i386-apple-darwin9.6.0 loading site script './config.site' loading build specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... found checking for working autoconf... found checking for working automake... found checking for working autoheader... found checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether ln -s works... yes checking for bison... bison -y checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for less... /usr/bin/less checking for perl... /usr/bin/perl checking whether perl version is at least 5.8.0... yes checking for dvips... no checking for tex... no checking for latex... no configure: WARNING: you cannot build DVI versions of the R manuals checking for makeindex... no checking for pdftex... no checking for pdflatex... no configure: WARNING: you cannot build PDF versions of the R manuals checking for makeinfo... /usr/bin/makeinfo checking whether makeinfo version is at least 4.7... yes checking for texi2dvi... /usr/bin/texi2dvi checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for firefox... no checking for mozilla... no checking for galeon... no checking for opera... no checking for xdg-open... no checking for kfmclient... no checking for gnome-moz-remote... no checking for open... /usr/bin/open using default browser ... /usr/bin/open checking for acroread... no checking for acroread4... no checking for evince... no checking for xpdf... no checking for gv... no checking for gnome-gv... no checking for ggv... no checking for kghostview... no checking for open... /usr/bin/open checking for pkg-config... no checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking whether gcc needs -traditional... no checking how to run the C preprocessor... gcc -E checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... no checking whether gcc accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether we are using the GNU Objective C compiler... no checking whether gcc accepts -g... no checking for cached ObjC++ compiler... none checking whether g++ can compile ObjC++... no checking whether can compile ObjC++... no checking for Objective C++ compiler... no working compiler found checking for a sed that does not truncate output... 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Installation directory: /Library/Frameworks C compiler: gcc -std=gnu99 -g -O2 Fortran 77 compiler: gfortran -g -O2 C++ compiler: g++ -g -O2 Fortran 90/95 compiler: gfortran -g -O2 Obj-C compiler: Interfaces supported: X11, aqua, tcltk External libraries: readline, BLAS(vecLib) Additional capabilities: JPEG, iconv, MBCS, NLS Options enabled: framework, R profiling, Java Recommended packages: yes configure: WARNING: you cannot build DVI versions of the R manuals configure: WARNING: you cannot build PDF versions of the R manuals mal:R-2.8.1 mike$ make -j4 make[1]: Nothing to be done for `R'. make[1]: Nothing to be done for `R'. make[2]: Nothing to be done for `R'. creating src/scripts/R.fe mkdir ../../bin mkdir ../../include mkdir ../../../include/R_ext making bzlib.d from bzlib.c making bzcompress.d from bzcompress.c making blocksort.d from blocksort.c making crctable.d from crctable.c making decompress.d from decompress.c making huffman.d from huffman.c making randtable.d from randtable.c gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c blocksort.c -o blocksort.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c bzlib.c -o bzlib.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c bzcompress.c -o bzcompress.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c crctable.c -o crctable.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c decompress.c -o decompress.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c huffman.c -o huffman.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c randtable.c -o randtable.o rm -f libbz2.a ar cr libbz2.a blocksort.o bzlib.o bzcompress.o crctable.o decompress.o huffman.o randtable.o ranlib libbz2.a making pcre_chartables.d from pcre_chartables.c making pcre_compile.d from pcre_compile.c making pcre_config.d from pcre_config.c making pcre_exec.d from pcre_exec.c making pcre_fullinfo.d from pcre_fullinfo.c making pcre_get.d from pcre_get.c making pcre_globals.d from pcre_globals.c making pcre_info.d from pcre_info.c making pcre_maketables.d from pcre_maketables.c making pcre_newline.d from pcre_newline.c making pcre_ord2utf8.d from pcre_ord2utf8.c making pcre_refcount.d from pcre_refcount.c making pcre_study.d from pcre_study.c making pcre_tables.d from pcre_tables.c making pcre_try_flipped.d from pcre_try_flipped.c making pcre_ucd.d from pcre_ucd.c making pcre_valid_utf8.d from pcre_valid_utf8.c making pcre_version.d from pcre_version.c making pcre_xclass.d from pcre_xclass.c gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_chartables.c -o pcre_chartables.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_compile.c -o pcre_compile.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_config.c -o pcre_config.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_exec.c -o pcre_exec.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_fullinfo.c -o pcre_fullinfo.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_get.c -o pcre_get.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_globals.c -o pcre_globals.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_info.c -o pcre_info.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_maketables.c -o pcre_maketables.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_newline.c -o pcre_newline.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_ord2utf8.c -o pcre_ord2utf8.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_refcount.c -o pcre_refcount.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_study.c -o pcre_study.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_tables.c -o pcre_tables.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_try_flipped.c -o pcre_try_flipped.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_ucd.c -o pcre_ucd.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_valid_utf8.c -o pcre_valid_utf8.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_version.c -o pcre_version.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre_xclass.c -o pcre_xclass.o rm -f libpcre.a ar cr libpcre.a pcre_chartables.o pcre_compile.o pcre_config.o pcre_exec.o pcre_fullinfo.o pcre_get.o pcre_globals.o pcre_info.o pcre_maketables.o pcre_newline.o pcre_ord2utf8.o pcre_refcount.o pcre_study.o pcre_tables.o pcre_try_flipped.o pcre_ucd.o pcre_valid_utf8.o pcre_version.o pcre_xclass.o ranlib libpcre.a making adler32.d from adler32.c making compress.d from compress.c making crc32.d from crc32.c making deflate.d from deflate.c making gzio.d from gzio.c making infback.d from infback.c making inffast.d from inffast.c making inflate.d from inflate.c making inftrees.d from inftrees.c making trees.d from trees.c making uncompr.d from uncompr.c making zutil.d from zutil.c gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c adler32.c -o adler32.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c compress.c -o compress.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c crc32.c -o crc32.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c deflate.c -o deflate.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c gzio.c -o gzio.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c infback.c -o infback.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c inffast.c -o inffast.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c inflate.c -o inflate.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c inftrees.c -o inftrees.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c trees.c -o trees.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c uncompr.c -o uncompr.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c zutil.c -o zutil.o rm -f libz.a ar cr libz.a adler32.o compress.o crc32.o deflate.o gzio.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o ranlib libz.a making bindtextdom.d from bindtextdom.c making dcgettext.d from dcgettext.c making dgettext.d from dgettext.c making gettext.d from gettext.c making finddomain.d from finddomain.c making loadmsgcat.d from loadmsgcat.c making textdomain.d from textdomain.c making l10nflist.d from l10nflist.c making explodename.d from explodename.c making dcigettext.d from dcigettext.c making dcngettext.d from dcngettext.c making dngettext.d from dngettext.c making ngettext.d from ngettext.c making plural-exp.d from plural-exp.c making plural.d from plural.c making langprefs.d from langprefs.c making localcharset.d from localcharset.c making localename.d from localename.c making osdep.d from osdep.c making printf.d from printf.c making intl-compat.d from intl-compat.c making hash-string.d from hash-string.c making lock.d from lock.c gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c bindtextdom.c -o bindtextdom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c dcgettext.c -o dcgettext.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c dgettext.c -o dgettext.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c gettext.c -o gettext.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c finddomain.c -o finddomain.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c loadmsgcat.c -o loadmsgcat.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c textdomain.c -o textdomain.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c l10nflist.c -o l10nflist.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c explodename.c -o explodename.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c dcigettext.c -o dcigettext.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c dcngettext.c -o dcngettext.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c dngettext.c -o dngettext.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c ngettext.c -o ngettext.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c plural.c -o plural.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c plural-exp.c -o plural-exp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c langprefs.c -o langprefs.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c localcharset.c -o localcharset.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c localename.c -o localename.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c printf.c -o printf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c osdep.c -o osdep.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c intl-compat.c -o intl-compat.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c hash-string.c -o hash-string.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I. -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -g -O2 -c lock.c -o lock.o lock.c:363: warning: braces around scalar initializer lock.c:363: warning: (near initialization for 'fresh_once.__sig') lock.c:363: warning: braces around scalar initializer lock.c:363: warning: (near initialization for 'fresh_once.__sig') lock.c:363: warning: excess elements in scalar initializer lock.c:363: warning: (near initialization for 'fresh_once.__sig') rm -f libintl.a ar cr libintl.a bindtextdom.o dcgettext.o dgettext.o gettext.o finddomain.o loadmsgcat.o textdomain.o l10nflist.o explodename.o dcigettext.o dcngettext.o dngettext.o ngettext.o plural.o plural-exp.o langprefs.o localcharset.o localename.o printf.o osdep.o intl-compat.o hash-string.o lock.o ranlib: file: libintl.a(printf.o) has no symbols ranlib: file: libintl.a(osdep.o) has no symbols ranlib libintl.a ranlib: file: libintl.a(printf.o) has no symbols ranlib: file: libintl.a(osdep.o) has no symbols making binning.d from binning.c making bakslv.d from bakslv.c making cpoly.d from cpoly.c making cumsum.d from cumsum.c making fmin.d from fmin.c making integrate.d from integrate.c making fft.d from fft.c making interv.d from interv.c making lbfgsb.d from lbfgsb.c making maxcol.d from maxcol.c making machar.d from machar.c making pretty.d from pretty.c making rcont.d from rcont.c making rowsum.d from rowsum.c making stem.d from stem.c making strsignif.d from strsignif.c making tabulate.d from tabulate.c making uncmin.d from uncmin.c making zeroin.d from zeroin.c gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c bakslv.c -o bakslv.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c binning.c -o binning.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c cpoly.c -o cpoly.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c cumsum.c -o cumsum.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c fft.c -o fft.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c fmin.c -o fmin.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c integrate.c -o integrate.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c interv.c -o interv.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c lbfgsb.c -o lbfgsb.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c machar.c -o machar.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c maxcol.c -o maxcol.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pretty.c -o pretty.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rcont.c -o rcont.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rowsum.c -o rowsum.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c stem.c -o stem.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c strsignif.c -o strsignif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c tabulate.c -o tabulate.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c uncmin.c -o uncmin.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c zeroin.c -o zeroin.o gfortran -fPIC -g -O2 -c ch2inv.f -o ch2inv.o gfortran -fPIC -g -O2 -c chol.f -o chol.o gfortran -fPIC -g -O2 -c dchdc.f -o dchdc.o gfortran -fPIC -g -O2 -c dpbfa.f -o dpbfa.o gfortran -fPIC -g -O2 -c dpbsl.f -o dpbsl.o gfortran -fPIC -g -O2 -c dpoco.f -o dpoco.o gfortran -fPIC -g -O2 -c dpodi.f -o dpodi.o gfortran -fPIC -g -O2 -c dpofa.f -o dpofa.o gfortran -fPIC -g -O2 -c dposl.f -o dposl.o gfortran -fPIC -g -O2 -c dqrdc.f -o dqrdc.o gfortran -fPIC -g -O2 -c dqrdc2.f -o dqrdc2.o gfortran -fPIC -g -O2 -c dqrls.f -o dqrls.o gfortran -fPIC -g -O2 -c dqrsl.f -o dqrsl.o gfortran -fPIC -g -O2 -c dqrutl.f -o dqrutl.o gfortran -fPIC -g -O2 -c dsvdc.f -o dsvdc.o gfortran -fPIC -g -O2 -c dtrco.f -o dtrco.o gfortran -fPIC -g -O2 -c dtrsl.f -o dtrsl.o gfortran -fPIC -g -O2 -c eigen.f -o eigen.o rm -f libappl.a ar cr libappl.a bakslv.o binning.o cpoly.o cumsum.o fft.o fmin.o integrate.o interv.o lbfgsb.o machar.o maxcol.o pretty.o rcont.o rowsum.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o ranlib libappl.a making d1mach.d from d1mach.c making mlutils.d from mlutils.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making qgamma.d from qgamma.c making pgamma.d from pgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making qf.d from qf.c making pf.d from pf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making qcauchy.d from qcauchy.c making pexp.d from pexp.c making qexp.d from qexp.c making dgeom.d from dgeom.c making rexp.d from rexp.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making dhyper.d from dhyper.c making rgeom.d from rgeom.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making pnbinom.d from pnbinom.c making dnbinom.d from dnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making qweibull.d from qweibull.c making pweibull.d from pweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c mlutils.c -o mlutils.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c d1mach.c -o d1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c i1mach.c -o i1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c fmax2.c -o fmax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c fmin2.c -o fmin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c fprec.c -o fprec.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c fround.c -o fround.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ftrunc.c -o ftrunc.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sign.c -o sign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c fsign.c -o fsign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c imax2.c -o imax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c imin2.c -o imin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c chebyshev.c -o chebyshev.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c log1p.c -o log1p.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c expm1.c -o expm1.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c lgammacor.c -o lgammacor.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c gammalims.c -o gammalims.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c stirlerr.c -o stirlerr.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c bd0.c -o bd0.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c gamma.c -o gamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c lgamma.c -o lgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c gamma_cody.c -o gamma_cody.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c beta.c -o beta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c lbeta.c -o lbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c polygamma.c -o polygamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c bessel_i.c -o bessel_i.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c bessel_j.c -o bessel_j.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c bessel_k.c -o bessel_k.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c bessel_y.c -o bessel_y.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c choose.c -o choose.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c snorm.c -o snorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sexp.c -o sexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dgamma.c -o dgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pgamma.c -o pgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qgamma.c -o qgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rgamma.c -o rgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dbeta.c -o dbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pbeta.c -o pbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qbeta.c -o qbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rbeta.c -o rbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dunif.c -o dunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c punif.c -o punif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qunif.c -o qunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c runif.c -o runif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dnorm.c -o dnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pnorm.c -o pnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qnorm.c -o qnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rnorm.c -o rnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dlnorm.c -o dlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c plnorm.c -o plnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qlnorm.c -o qlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rlnorm.c -o rlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c df.c -o df.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pf.c -o pf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qf.c -o qf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rf.c -o rf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dnf.c -o dnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dt.c -o dt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pt.c -o pt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qt.c -o qt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rt.c -o rt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dnt.c -o dnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dchisq.c -o dchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pchisq.c -o pchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qchisq.c -o qchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rchisq.c -o rchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rnchisq.c -o rnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dbinom.c -o dbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pbinom.c -o pbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qbinom.c -o qbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rbinom.c -o rbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rmultinom.c -o rmultinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dcauchy.c -o dcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcauchy.c -o pcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qcauchy.c -o qcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rcauchy.c -o rcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dexp.c -o dexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pexp.c -o pexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qexp.c -o qexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rexp.c -o rexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dgeom.c -o dgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pgeom.c -o pgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qgeom.c -o qgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rgeom.c -o rgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dhyper.c -o dhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c phyper.c -o phyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qhyper.c -o qhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rhyper.c -o rhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dnbinom.c -o dnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pnbinom.c -o pnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qnbinom.c -o qnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rnbinom.c -o rnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dpois.c -o dpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ppois.c -o ppois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qpois.c -o qpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rpois.c -o rpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dweibull.c -o dweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pweibull.c -o pweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qweibull.c -o qweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rweibull.c -o rweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dlogis.c -o dlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c plogis.c -o plogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qlogis.c -o qlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rlogis.c -o rlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dnchisq.c -o dnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pnchisq.c -o pnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qnchisq.c -o qnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dnbeta.c -o dnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pnbeta.c -o pnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qnbeta.c -o qnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pnf.c -o pnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pnt.c -o pnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qnf.c -o qnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qnt.c -o qnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ptukey.c -o ptukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qtukey.c -o qtukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c toms708.c -o toms708.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c wilcox.c -o wilcox.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c signrank.c -o signrank.o rm -rf libnmath.a ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib: file: libnmath.a(mlutils.o) has no symbols ranlib: file: libnmath.a(expm1.o) has no symbols ranlib libnmath.a ranlib: file: libnmath.a(mlutils.o) has no symbols ranlib: file: libnmath.a(expm1.o) has no symbols config.status: creating src/unix/Makefile making dynload.d from dynload.c making edit.d from edit.c making stubs.d from stubs.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c making aqua.d from aqua.c making Rembedded.d from Rembedded.c gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dynload.c -o dynload.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c edit.c -o edit.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c stubs.c -o stubs.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c system.c -o system.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sys-unix.c -o sys-unix.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sys-std.c -o sys-std.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c X11.c -o X11.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c aqua.c -o aqua.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c Rembedded.c -o Rembedded.o rm -rf libunix.a ar cr libunix.a dynload.o edit.o stubs.o system.o sys-unix.o sys-std.o X11.o aqua.o Rembedded.o ranlib libunix.a gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -DR_HOME='"/Users/mike/Downloads/R-2.8.1"' -o Rscript \ ./Rscript.c config.status: creating src/main/Makefile making CConverters.d from CConverters.c making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making apse.d from apse.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making base.d from base.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cov.d from cov.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making deriv.d from deriv.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making format.d from format.c making eval.d from eval.c making fourier.d from fourier.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making identical.d from identical.c making inlined.d from inlined.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making model.d from model.c making objects.d from objects.c making optim.d from optim.c making optimize.d from optimize.c making options.d from options.c making par.d from par.c making paste.d from paste.c making pcre.d from pcre.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making random.d from random.c making regex.d from regex.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making scan.d from scan.c making saveload.d from saveload.c making seq.d from seq.c making serialize.d from serialize.c making size.d from size.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making unique.d from unique.c making util.d from util.c making version.d from version.c making vfonts.d from vfonts.c making Rmain.d from Rmain.c making alloca.d from alloca.c making acosh.d from acosh.c making asinh.d from asinh.c making atanh.d from atanh.c making mkdtemp.d from mkdtemp.c making snprintf.d from snprintf.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c making vsnprintf.d from vsnprintf.c making xspline.d from xspline.c gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c CConverters.c -o CConverters.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c CommandLineArgs.c -o CommandLineArgs.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c Rdynload.c -o Rdynload.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c Renviron.c -o Renviron.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c RNG.c -o RNG.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c apply.c -o apply.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c apse.c -o apse.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c arithmetic.c -o arithmetic.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c array.c -o array.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c attrib.c -o attrib.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c base.c -o base.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c bind.c -o bind.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c builtin.c -o builtin.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c character.c -o character.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c coerce.c -o coerce.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c colors.c -o colors.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c complex.c -o complex.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c connections.c -o connections.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c context.c -o context.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c cov.c -o cov.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c cum.c -o cum.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dcf.c -o dcf.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c datetime.c -o datetime.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c debug.c -o debug.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c deparse.c -o deparse.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c deriv.c -o deriv.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c devices.c -o devices.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dotcode.c -o dotcode.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dounzip.c -o dounzip.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dstruct.c -o dstruct.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c duplicate.c -o duplicate.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c engine.c -o engine.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c envir.c -o envir.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c errors.c -o errors.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c eval.c -o eval.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c format.c -o format.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c fourier.c -o fourier.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c gevents.c -o gevents.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c gram.c -o gram.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c gram-ex.c -o gram-ex.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c graphics.c -o graphics.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c identical.c -o identical.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c inlined.c -o inlined.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c internet.c -o internet.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c iosupport.c -o iosupport.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c lapack.c -o lapack.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c list.c -o list.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c localecharset.c -o localecharset.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c logic.c -o logic.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c main.c -o main.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c mapply.c -o mapply.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c match.c -o match.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c memory.c -o memory.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c model.c -o model.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c names.c -o names.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c objects.c -o objects.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c optim.c -o optim.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c optimize.c -o optimize.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c options.c -o options.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c par.c -o par.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c paste.c -o paste.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c pcre.c -o pcre.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c platform.c -o platform.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c plot.c -o plot.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c plot3d.c -o plot3d.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c plotmath.c -o plotmath.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c print.c -o print.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c printarray.c -o printarray.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c printvector.c -o printvector.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c printutils.c -o printutils.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c qsort.c -o qsort.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c random.c -o random.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c regex.c -o regex.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c registration.c -o registration.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c relop.c -o relop.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rlocale.c -o rlocale.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c saveload.c -o saveload.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c scan.c -o scan.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c seq.c -o seq.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c serialize.c -o serialize.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c size.c -o size.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sort.c -o sort.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c source.c -o source.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c split.c -o split.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sprintf.c -o sprintf.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c startup.c -o startup.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c subassign.c -o subassign.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c subscript.c -o subscript.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c subset.c -o subset.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c summary.c -o summary.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sysutils.c -o sysutils.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c unique.c -o unique.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c util.c -o util.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c version.c -o version.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c vfonts.c -o vfonts.o gfortran -fPIC -g -O2 -c xxxpr.f -o xxxpr.o gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -install_name libR.dylib -compatibility_version 2.8.0 -current_version 2.8.1 -headerpad_max_install_names -o libR.dylib CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o apse.o arithmetic.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o inlined.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/Rembedded.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a ../extra/intl/libintl.a -framework vecLib -lgfortran -Wl,-framework -Wl,CoreFoundation -lreadline -lm -lgomp -liconv mkdir /Users/mike/Downloads/R-2.8.1/bin/exec mkdir /Users/mike/Downloads/R-2.8.1/lib gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c Rmain.c -o Rmain.o gcc -std=gnu99 -L/usr/local/lib -o R.bin Rmain.o -L../../lib -lR making rotated.d from rotated.c making dataentry.d from dataentry.c making devX11.d from devX11.c making rbitmap.d from rbitmap.c gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dataentry.c -o dataentry.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c devX11.c -o devX11.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rotated.c -o rotated.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rbitmap.c -o rbitmap.o gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o R_X11.so dataentry.o devX11.o rotated.o rbitmap.o -lSM -lICE -L/usr/X11/lib -lX11 -lXt -lXmu -ljpeg -L../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir /Users/mike/Downloads/R-2.8.1/modules making internet.d from internet.c making Rsock.d from Rsock.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c Rsock.c -o Rsock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c internet.c -o internet.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c nanoftp.c -o nanoftp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c nanohttp.c -o nanohttp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sock.c -o sock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sockconn.c -o sockconn.o gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o internet.so Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -L../../../lib -lR -Wl,-framework -Wl,CoreFoundation making Lapack.d from Lapack.c making vecLibg95c.d from vecLibg95c.c gfortran -fPIC -g -O2 -ffloat-store -c dlamch.f -o dlamch.o gfortran -fPIC -g -O2 -c dlapack0.f -o dlapack0.o gfortran -fPIC -g -O2 -c dlapack1.f -o dlapack1.o gfortran -fPIC -g -O2 -c dlapack2.f -o dlapack2.o gfortran -fPIC -g -O2 -c dlapack3.f -o dlapack3.o gfortran -fPIC -g -O2 -c dlapack4.f -o dlapack4.o gfortran -fPIC -g -O2 -c cmplx.f -o cmplx.o gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o libRlapack.dylib dlamch.o dlapack0.o dlapack1.o dlapack2.o dlapack3.o dlapack4.o cmplx.o -install_name libRlapack.dylib -compatibility_version 2.8.0 -current_version 2.8.1 -headerpad_max_install_names -framework vecLib -lgfortran -L../../../lib -lR gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c Lapack.c -o Lapack.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c vecLibg95c.c -o vecLibg95c.o gfortran -fPIC -g -O2 -c vecLibg95f.f -o vecLibg95f.o gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o lapack.so Lapack.o vecLibg95c.o vecLibg95f.o -L../../../lib -lR -Wl,-framework -Wl,CoreFoundation -L../../../lib -lRlapack -framework vecLib -lgfortran /Users/mike/Downloads/R-2.8.1/lib/libRlapack.dylib is unchanged making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c g_alab_her.c -o g_alab_her.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c g_cntrlify.c -o g_cntrlify.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c g_fontdb.c -o g_fontdb.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c g_her_glyph.c -o g_her_glyph.o gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -L../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../library building system startup profile mkdir ../../../library/base mkdir ../../../library/base/R building package 'base' mkdir ../../../library/base/demo mkdir ../../../library/base/po mkdir ../../../library/base/man building package 'tools' mkdir ../../../library/tools mkdir ../../../library/tools/R mkdir ../../../library/tools/po mkdir ../../../library/tools/man making Rmd5.d from Rmd5.c making text.d from text.c making init.d from init.c making md5.d from md5.c make[5]: `Makedeps' is up to date. gcc -std=gnu99 -I../../../../include -I/usr/local/include -fPIC -g -O2 -c text.c -o text.o gcc -std=gnu99 -I../../../../include -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -std=gnu99 -I../../../../include -I/usr/local/include -fPIC -g -O2 -c Rmd5.c -o Rmd5.o gcc -std=gnu99 -I../../../../include -I/usr/local/include -fPIC -g -O2 -c md5.c -o md5.o gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/tools/libs building package 'utils' mkdir ../../../library/utils mkdir ../../../library/utils/R mkdir ../../../library/utils/po mkdir ../../../library/utils/Sweave mkdir ../../../library/utils/misc mkdir ../../../library/utils/man building package 'grDevices' mkdir ../../../library/grDevices mkdir ../../../library/grDevices/R mkdir ../../../library/grDevices/po mkdir ../../../library/grDevices/afm mkdir ../../../library/grDevices/enc mkdir ../../../library/grDevices/man making chull.d from chull.c making devPicTeX.d from devPicTeX.c making devNull.d from devNull.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c making init.d from init.c making qdBitmap.d from qdBitmap.c making qdPDF.d from qdPDF.c making qdCocoa.d from qdCocoa.m <built-in>:0: internal compiler error: Abort trap Please submit a full bug report, with preprocessed source if appropriate. See <http://gcc.gnu.org/bugs.html> for instructions. make[4]: *** [qdCocoa.d] Error 1 make[4]: *** Waiting for unfinished jobs.... make[3]: *** [all] Error 1 make[2]: *** [R] Error 1 make[1]: *** [R] Error 1 make: *** [R] Error 1 -- Mike Lawrence Graduate Student Department of Psychology Dalhousie University www.thatmike.com Looking to arrange a meeting? Do so at: http://www.timetomeet.info/with/mike/ ~ Certainty is folly... I think. ~c [[alternative HTML version deleted]]
Peter Dalgaard
2008-Dec-22 21:34 UTC
[R] Error compiling R.2.8.1 with gcc 4.4 on Mac OS 10.5.6
Mike Lawrence wrote:> Hi all, > I've encountered a build error with the latest R source (2.8.1). This is a > relatively fresh install of OS Leopard (10.5.6), latest developer tools > installed, gcc/g++/gfortran version 4.4 installed (via > http://hpc.sourceforge.net/, after which I updated the gcc & g++ symlinks to > link to the 4.4 versions; gfortran used the 4.4 version without updating the > symlink). > > Ultimately I wanted to instalI pnmath, so as per a previous thread ( > http://www.nabble.com/Parallel-R-tt18173953.html#a18196319) I built with: > > LIBS=-lgomp ./configure --with-blas='-framework vecLib' > make -j4 > > The configure runs without a hitch, but make fails, throwing an error > seemingly related to qdCocoa: > making qdCocoa.d from qdCocoa.m > <built-in>:0: internal compiler error: Abort trap > > Below is the output of configure, followed by the output of make (error is > in the last 10 lines). Any suggestions to fix this would be greatly > appreciated.Ouch. As you probably realize, this is very Mac-specific, and the actual bug is in GCC and has nothing to do with R. I don't think there's any obvious way to fix this, but there might be a temporary workaround. I'd consider making the .d file by hand, so that make doesn't even try to build it. You can probably rather easily create one based on one of the other .d files in the same directory (.d files are usually overkill, it is probably not necessary to get it completely right.) Next question is whether this GCC can handle .m files at all....> making qdBitmap.d from qdBitmap.c > making qdPDF.d from qdPDF.c > making qdCocoa.d from qdCocoa.m > <built-in>:0: internal compiler error: Abort trap > Please submit a full bug report, > with preprocessed source if appropriate. > See <http://gcc.gnu.org/bugs.html> for instructions. > make[4]: *** [qdCocoa.d] Error 1 > make[4]: *** Waiting for unfinished jobs.... > make[3]: *** [all] Error 1 > make[2]: *** [R] Error 1 > make[1]: *** [R] Error 1 > make: *** [R] Error 1 > > >-- O__ ---- Peter Dalgaard ?ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907