R help - Dec 2008 - Error compiling R.2.8.1 with gcc 4.4 on Mac OS 10.5.6

Hi all,
I've encountered a build error with the latest R source (2.8.1). This is a
relatively fresh install of OS Leopard (10.5.6), latest developer tools
installed, gcc/g++/gfortran version 4.4 installed (via
http://hpc.sourceforge.net/, after which I updated the gcc & g++ symlinks to
link to the 4.4 versions; gfortran used the 4.4 version without updating the
symlink).

Ultimately I wanted to instalI pnmath, so as per a previous thread (
http://www.nabble.com/Parallel-R-tt18173953.html#a18196319) I built with:

LIBS=-lgomp ./configure --with-blas='-framework vecLib'
make -j4

The configure runs without a hitch, but make fails, throwing an error
seemingly related to qdCocoa:
making qdCocoa.d from qdCocoa.m
<built-in>:0: internal compiler error: Abort trap

Below is the output of configure, followed by the output of make (error is
in the last 10 lines). Any suggestions to fix this would be greatly
appreciated.

mal:R-2.8.1 mike$ LIBS=-lgomp ./configure --with-blas='-framework
vecLib'
checking build system type... i386-apple-darwin9.6.0
checking host system type... i386-apple-darwin9.6.0
loading site script './config.site'
loading build specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... found
checking for working autoconf... found
checking for working automake... found
checking for working autoheader... found
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /usr/bin/sed
checking for less... /usr/bin/less
checking for perl... /usr/bin/perl
checking whether perl version is at least 5.8.0... yes
checking for dvips... no
checking for tex... no
checking for latex... no
configure: WARNING: you cannot build DVI versions of the R manuals
checking for makeindex... no
checking for pdftex... no
checking for pdflatex... no
configure: WARNING: you cannot build PDF versions of the R manuals
checking for makeinfo... /usr/bin/makeinfo
checking whether makeinfo version is at least 4.7... yes
checking for texi2dvi... /usr/bin/texi2dvi
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /usr/bin/gzip
checking for firefox... no
checking for mozilla... no
checking for galeon... no
checking for opera... no
checking for xdg-open... no
checking for kfmclient... no
checking for gnome-moz-remote... no
checking for open... /usr/bin/open
using default browser ... /usr/bin/open
checking for acroread... no
checking for acroread4... no
checking for evince... no
checking for xpdf... no
checking for gv... no
checking for gnome-gv... no
checking for ggv... no
checking for kghostview... no
checking for open... /usr/bin/open
checking for pkg-config... no
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking whether gcc needs -traditional... no
checking how to run the C preprocessor... gcc -E
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... no
checking whether gcc accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking for cached ObjC++ compiler... none
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
checking for Objective C++ compiler... no working compiler found
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -p
checking the name lister (/usr/bin/nm -p) interface... BSD nm
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking how to recognize dependent libraries... pass_all
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -p output from gcc object... ok
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries...
yes
checking dynamic linker characteristics... darwin9.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking whether the g++ linker (/usr/bin/ld) supports shared libraries...
yes
checking for g++ option to produce PIC... -fno-common -DPIC
checking if g++ PIC flag -fno-common -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries...
yes
checking dynamic linker characteristics... darwin9.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fno-common
checking if gfortran PIC flag -fno-common works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared
libraries... yes
checking dynamic linker characteristics... darwin9.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking for sin in -lm... yes
checking for library containing dlopen... none required
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... no
checking for ANSI C header files... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... no
checking elf.h presence... no
checking for elf.h... no
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking fpu_control.h usability... no
checking fpu_control.h presence... no
checking for fpu_control.h... no
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking for unistd.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... no
checking return type of signal handlers... void
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc option to accept ISO C99... -std=gnu99
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached)
-std=gnu99
checking for inline... inline
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 4
checking for long long... yes
checking size of long long... 8
checking for double... yes
checking size of double... 8
checking for long double... yes
checking size of long double... 16
checking for size_t... (cached) yes
checking size of size_t... 4
checking whether we can compute C Make dependencies... yes, using gcc
-std=gnu99 -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/local/lib
-L/usr/local/lib/gcc/i386-apple-darwin9.4.0/4.4.0
-L/usr/local/lib/gcc/i386-apple-darwin9.4.0/4.4.0/../../.. -lgfortranbegin
-lgfortran
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99...  -lcrt1.10.5.o
-L/usr/local/lib -L/usr/local/lib/gcc/i386-apple-darwin9.4.0/4.4.0
-L/usr/local/lib/gcc/i386-apple-darwin9.4.0/4.4.0/../../.. -lgcc_s.10.5
-lSystem
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no
extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking whether g++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... yes, using cpp -M
checking for working Foundation implementation... no
checking whether C runtime needs -D__NO_MATH_INLINES... no
checking for xmkmf... /usr/X11/bin/xmkmf
checking whether linker supports dynamic lookup... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether rint exists and is declared... yes
checking for fseeko... yes
checking for ftello... yes
checking for isblank... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking whether __va_copy exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether system exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether strcoll exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether times exists and is declared... yes
checking whether time exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... no
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... no
checking whether putenv("FOO=") can unset an environment variable...
no
checking for nl_langinfo and CODESET... yes
checking for acosh... yes
checking for asinh... yes
checking for atanh... yes
checking for mkdtemp... yes
checking for snprintf... yes
checking for strdup... yes
checking for strncasecmp... yes
checking for vsnprintf... yes
checking whether acosh is declared... yes
checking whether asinh is declared... yes
checking whether atanh is declared... yes
checking whether mkdtemp is declared... yes
checking whether snprintf is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking whether vsnprintf is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether C99 double complex is supported...
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether cacosh exists and is declared... yes
checking whether casinh exists and is declared... yes
checking whether catanh exists and is declared... yes
checking whether C99 double complex is compatible with Rcomplex... yes
yes
checking for cblas_cdotu_sub in vecLib framework... -framework vecLib
checking for dgemm_ in -framework vecLib... yes
checking whether double complex BLAS can be used... no
checking whether the BLAS is complete... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... in libiconv
checking whether iconv accepts "UTF-8", "latin1" and
"UCS-*"... yes
checking for iconvlist... yes
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for X... libraries /usr/X11/lib, headers /usr/X11/include
checking whether -R must be followed by a space... neither works
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... yes
checking X11/Xmu/Atoms.h presence... yes
checking for X11/Xmu/Atoms.h... yes
checking for XmuInternAtom in -lXmu... yes
configure: not checking for cairo as pkg-config is not present
checking for CFStringGetSystemEncoding in CoreFoundation framework...
-framework CoreFoundation
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories...
/usr/lib/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.0.5... no
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking whether zlib support needs to be compiled... yes
checking mmap support for zlib... yes
checking whether bzip2 support needs to be compiled... yes
checking whether PCRE support needs to be compiled... yes
checking tiffio.h usability... no
checking tiffio.h presence... no
checking for tiffio.h... no
checking for TIFFOpen in -ltiff... no
checking whether leap seconds are treated according to POSIX... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... yes
checking for lpr... lpr
checking for paperconf... false
checking for java... /usr/bin/java
checking for javac... /usr/bin/javac
checking for javah... /usr/bin/javah
checking for jar... /usr/bin/jar
checking whether Java compiler works... yes
checking whether Java compiler works for version 1.4... yes
checking whether Java interpreter works... yes
checking Java environment...
/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home
checking for cached Java settings... no
checking whether JNI programs can be compiled... yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fno-common
checking if gfortran PIC flag -fno-common works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared
libraries... yes
checking dynamic linker characteristics... darwin9.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for recommended packages... yes
checking whether NLS is requested... yes
checking whether make sets $(MAKE)... yes
checking for msgfmt... no
checking for gmsgfmt... :
checking for xgettext... no
checking for msgmerge... no
checking whether we are using the GNU C Library 2 or newer... no
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for inline... inline
checking for stdint.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by GCC... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... no
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_kill in -lpthread... yes
checking for pthread_rwlock_t... yes
checking for multithread API to use... posix
checking argz.h usability... no
checking argz.h presence... no
checking for argz.h... no
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) no
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... no
checking for argz_stringify... no
checking for argz_next... no
checking for __fsetlocking... no
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... no
checking for iconv... yes
checking for iconv declaration...
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t
*inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... no
checking for bison... bison
checking version of bison... 2.3, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... no
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... yes
checking for CFLocaleCopyCurrent... yes
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... (cached) yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) yes
checking for CFLocaleCopyCurrent... (cached) yes
checking whether included gettext is requested... no
checking for GNU gettext in libc... no
checking for GNU gettext in libintl... no
checking whether to use NLS... yes
checking where the gettext function comes from... included intl directory
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
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R is now configured for i386-apple-darwin9.6.0

  Source directory:          .
  Installation directory:    /Library/Frameworks

  C compiler:                gcc -std=gnu99  -g -O2
  Fortran 77 compiler:       gfortran  -g -O2

  C++ compiler:              g++  -g -O2
  Fortran 90/95 compiler:    gfortran -g -O2
  Obj-C compiler:

  Interfaces supported:      X11, aqua, tcltk
  External libraries:        readline, BLAS(vecLib)
  Additional capabilities:   JPEG, iconv, MBCS, NLS
  Options enabled:           framework, R profiling, Java

  Recommended packages:      yes

configure: WARNING: you cannot build DVI versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals


mal:R-2.8.1 mike$ make -j4
make[1]: Nothing to be done for `R'.
make[1]: Nothing to be done for `R'.
make[2]: Nothing to be done for `R'.
creating src/scripts/R.fe
mkdir ../../bin
mkdir ../../include
mkdir ../../../include/R_ext
making bzlib.d from bzlib.c
making bzcompress.d from bzcompress.c
making blocksort.d from blocksort.c
making crctable.d from crctable.c
making decompress.d from decompress.c
making huffman.d from huffman.c
making randtable.d from randtable.c
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c blocksort.c -o
blocksort.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c bzlib.c -o bzlib.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c bzcompress.c -o
bzcompress.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c crctable.c -o
crctable.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c decompress.c -o
decompress.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c huffman.c -o
huffman.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c randtable.c -o
randtable.o
rm -f libbz2.a
ar cr libbz2.a blocksort.o bzlib.o bzcompress.o crctable.o decompress.o
huffman.o randtable.o
ranlib libbz2.a
making pcre_chartables.d from pcre_chartables.c
making pcre_compile.d from pcre_compile.c
making pcre_config.d from pcre_config.c
making pcre_exec.d from pcre_exec.c
making pcre_fullinfo.d from pcre_fullinfo.c
making pcre_get.d from pcre_get.c
making pcre_globals.d from pcre_globals.c
making pcre_info.d from pcre_info.c
making pcre_maketables.d from pcre_maketables.c
making pcre_newline.d from pcre_newline.c
making pcre_ord2utf8.d from pcre_ord2utf8.c
making pcre_refcount.d from pcre_refcount.c
making pcre_study.d from pcre_study.c
making pcre_tables.d from pcre_tables.c
making pcre_try_flipped.d from pcre_try_flipped.c
making pcre_ucd.d from pcre_ucd.c
making pcre_valid_utf8.d from pcre_valid_utf8.c
making pcre_version.d from pcre_version.c
making pcre_xclass.d from pcre_xclass.c
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_chartables.c
-o pcre_chartables.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_compile.c -o
pcre_compile.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_config.c -o
pcre_config.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_exec.c -o
pcre_exec.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_fullinfo.c -o
pcre_fullinfo.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_get.c -o
pcre_get.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_globals.c -o
pcre_globals.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_info.c -o
pcre_info.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_maketables.c
-o pcre_maketables.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_newline.c -o
pcre_newline.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_ord2utf8.c -o
pcre_ord2utf8.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_refcount.c -o
pcre_refcount.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_study.c -o
pcre_study.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_tables.c -o
pcre_tables.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_try_flipped.c
-o pcre_try_flipped.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_ucd.c -o
pcre_ucd.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_valid_utf8.c
-o pcre_valid_utf8.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_version.c -o
pcre_version.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c pcre_xclass.c -o
pcre_xclass.o
rm -f libpcre.a
ar cr libpcre.a pcre_chartables.o pcre_compile.o pcre_config.o pcre_exec.o
pcre_fullinfo.o pcre_get.o pcre_globals.o pcre_info.o pcre_maketables.o
pcre_newline.o pcre_ord2utf8.o pcre_refcount.o pcre_study.o pcre_tables.o
pcre_try_flipped.o pcre_ucd.o pcre_valid_utf8.o pcre_version.o pcre_xclass.o
ranlib libpcre.a
making adler32.d from adler32.c
making compress.d from compress.c
making crc32.d from crc32.c
making deflate.d from deflate.c
making gzio.d from gzio.c
making infback.d from infback.c
making inffast.d from inffast.c
making inflate.d from inflate.c
making inftrees.d from inftrees.c
making trees.d from trees.c
making uncompr.d from uncompr.c
making zutil.d from zutil.c
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c adler32.c -o adler32.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c compress.c -o compress.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c crc32.c -o crc32.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c deflate.c -o deflate.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c gzio.c -o gzio.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c infback.c -o infback.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c inffast.c -o inffast.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c inflate.c -o inflate.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c inftrees.c -o inftrees.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c trees.c -o trees.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c uncompr.c -o uncompr.o
gcc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include
-I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
 -c zutil.c -o zutil.o
rm -f libz.a
ar cr libz.a adler32.o compress.o crc32.o deflate.o gzio.o infback.o
inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
ranlib libz.a
making bindtextdom.d from bindtextdom.c
making dcgettext.d from dcgettext.c
making dgettext.d from dgettext.c
making gettext.d from gettext.c
making finddomain.d from finddomain.c
making loadmsgcat.d from loadmsgcat.c
making textdomain.d from textdomain.c
making l10nflist.d from l10nflist.c
making explodename.d from explodename.c
making dcigettext.d from dcigettext.c
making dcngettext.d from dcngettext.c
making dngettext.d from dngettext.c
making ngettext.d from ngettext.c
making plural-exp.d from plural-exp.c
making plural.d from plural.c
making langprefs.d from langprefs.c
making localcharset.d from localcharset.c
making localename.d from localename.c
making osdep.d from osdep.c
making printf.d from printf.c
making intl-compat.d from intl-compat.c
making hash-string.d from hash-string.c
making lock.d from lock.c
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c bindtextdom.c -o bindtextdom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c dcgettext.c -o dcgettext.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c dgettext.c -o dgettext.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c gettext.c -o gettext.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c finddomain.c -o finddomain.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c loadmsgcat.c -o loadmsgcat.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c textdomain.c -o textdomain.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c l10nflist.c -o l10nflist.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c explodename.c -o explodename.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c dcigettext.c -o dcigettext.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c dcngettext.c -o dcngettext.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c dngettext.c -o dngettext.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c ngettext.c -o ngettext.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c plural.c -o plural.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c plural-exp.c -o plural-exp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c langprefs.c -o langprefs.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c localcharset.c -o localcharset.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c localename.c -o localename.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c printf.c -o printf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c osdep.c -o osdep.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c intl-compat.c -o intl-compat.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c hash-string.c -o hash-string.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I.
-I/usr/local/include -DLOCALEDIR=\"\"
-DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL
-DHAVE_CONFIG_H
-I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -g -O2
 -c lock.c -o lock.o
lock.c:363: warning: braces around scalar initializer
lock.c:363: warning: (near initialization for 'fresh_once.__sig')
lock.c:363: warning: braces around scalar initializer
lock.c:363: warning: (near initialization for 'fresh_once.__sig')
lock.c:363: warning: excess elements in scalar initializer
lock.c:363: warning: (near initialization for 'fresh_once.__sig')
rm -f libintl.a
ar cr libintl.a bindtextdom.o dcgettext.o dgettext.o gettext.o finddomain.o
loadmsgcat.o textdomain.o l10nflist.o explodename.o dcigettext.o
dcngettext.o dngettext.o ngettext.o plural.o plural-exp.o langprefs.o
localcharset.o localename.o printf.o osdep.o intl-compat.o hash-string.o
lock.o
ranlib: file: libintl.a(printf.o) has no symbols
ranlib: file: libintl.a(osdep.o) has no symbols
ranlib libintl.a
ranlib: file: libintl.a(printf.o) has no symbols
ranlib: file: libintl.a(osdep.o) has no symbols
making binning.d from binning.c
making bakslv.d from bakslv.c
making cpoly.d from cpoly.c
making cumsum.d from cumsum.c
making fmin.d from fmin.c
making integrate.d from integrate.c
making fft.d from fft.c
making interv.d from interv.c
making lbfgsb.d from lbfgsb.c
making maxcol.d from maxcol.c
making machar.d from machar.c
making pretty.d from pretty.c
making rcont.d from rcont.c
making rowsum.d from rowsum.c
making stem.d from stem.c
making strsignif.d from strsignif.c
making tabulate.d from tabulate.c
making uncmin.d from uncmin.c
making zeroin.d from zeroin.c
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c bakslv.c -o bakslv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c binning.c -o
binning.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c cpoly.c -o cpoly.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c cumsum.c -o cumsum.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c fft.c -o fft.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c fmin.c -o fmin.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c integrate.c -o
integrate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c interv.c -o interv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c lbfgsb.c -o lbfgsb.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c machar.c -o machar.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c maxcol.c -o maxcol.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pretty.c -o pretty.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rcont.c -o rcont.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rowsum.c -o rowsum.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c stem.c -o stem.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c strsignif.c -o
strsignif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c tabulate.c -o
tabulate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c uncmin.c -o uncmin.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c zeroin.c -o zeroin.o
gfortran  -fPIC  -g -O2 -c ch2inv.f -o ch2inv.o
gfortran  -fPIC  -g -O2 -c chol.f -o chol.o
gfortran  -fPIC  -g -O2 -c dchdc.f -o dchdc.o
gfortran  -fPIC  -g -O2 -c dpbfa.f -o dpbfa.o
gfortran  -fPIC  -g -O2 -c dpbsl.f -o dpbsl.o
gfortran  -fPIC  -g -O2 -c dpoco.f -o dpoco.o
gfortran  -fPIC  -g -O2 -c dpodi.f -o dpodi.o
gfortran  -fPIC  -g -O2 -c dpofa.f -o dpofa.o
gfortran  -fPIC  -g -O2 -c dposl.f -o dposl.o
gfortran  -fPIC  -g -O2 -c dqrdc.f -o dqrdc.o
gfortran  -fPIC  -g -O2 -c dqrdc2.f -o dqrdc2.o
gfortran  -fPIC  -g -O2 -c dqrls.f -o dqrls.o
gfortran  -fPIC  -g -O2 -c dqrsl.f -o dqrsl.o
gfortran  -fPIC  -g -O2 -c dqrutl.f -o dqrutl.o
gfortran  -fPIC  -g -O2 -c dsvdc.f -o dsvdc.o
gfortran  -fPIC  -g -O2 -c dtrco.f -o dtrco.o
gfortran  -fPIC  -g -O2 -c dtrsl.f -o dtrsl.o
gfortran  -fPIC  -g -O2 -c eigen.f -o eigen.o
rm -f libappl.a
ar cr libappl.a bakslv.o binning.o cpoly.o cumsum.o fft.o fmin.o integrate.o
interv.o lbfgsb.o machar.o maxcol.o pretty.o rcont.o rowsum.o stem.o
strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o
dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o
dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o
ranlib libappl.a
making d1mach.d from d1mach.c
making mlutils.d from mlutils.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making qgamma.d from qgamma.c
making pgamma.d from pgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making qf.d from qf.c
making pf.d from pf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making qcauchy.d from qcauchy.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making dgeom.d from dgeom.c
making rexp.d from rexp.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making dhyper.d from dhyper.c
making rgeom.d from rgeom.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making pnbinom.d from pnbinom.c
making dnbinom.d from dnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making qweibull.d from qweibull.c
making pweibull.d from pweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c mlutils.c -o
mlutils.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c chebyshev.c -o
chebyshev.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c lgammacor.c -o
lgammacor.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c gammalims.c -o
gammalims.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c stirlerr.c -o
stirlerr.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c gamma_cody.c -o
gamma_cody.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c polygamma.c -o
polygamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c bessel_i.c -o
bessel_i.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c bessel_j.c -o
bessel_j.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c bessel_k.c -o
bessel_k.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c bessel_y.c -o
bessel_y.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c df.c -o df.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rnchisq.c -o
rnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rmultinom.c -o
rmultinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dcauchy.c -o
dcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pcauchy.c -o
pcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qcauchy.c -o
qcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rcauchy.c -o
rcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dnbinom.c -o
dnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pnbinom.c -o
pnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qnbinom.c -o
qnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rnbinom.c -o
rnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dweibull.c -o
dweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pweibull.c -o
pweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qweibull.c -o
qweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rweibull.c -o
rweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dnchisq.c -o
dnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pnchisq.c -o
pnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qnchisq.c -o
qnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c toms708.c -o
toms708.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c signrank.c -o
signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o
fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o
lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o
beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o
choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o
qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o
rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o
pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o
pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o
rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o
dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o
dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o
dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o
pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o
wilcox.o signrank.o
ranlib: file: libnmath.a(mlutils.o) has no symbols
ranlib: file: libnmath.a(expm1.o) has no symbols
ranlib libnmath.a
ranlib: file: libnmath.a(mlutils.o) has no symbols
ranlib: file: libnmath.a(expm1.o) has no symbols
config.status: creating src/unix/Makefile
making dynload.d from dynload.c
making edit.d from edit.c
making stubs.d from stubs.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
making aqua.d from aqua.c
making Rembedded.d from Rembedded.c
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
dynload.c -o dynload.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
edit.c -o edit.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
stubs.c -o stubs.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
system.c -o system.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
sys-unix.c -o sys-unix.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
sys-std.c -o sys-std.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
X11.c -o X11.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
aqua.c -o aqua.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
Rembedded.c -o Rembedded.o
rm -rf libunix.a
ar cr libunix.a dynload.o edit.o stubs.o system.o sys-unix.o sys-std.o X11.o
aqua.o Rembedded.o
ranlib libunix.a
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2
-DR_HOME='"/Users/mike/Downloads/R-2.8.1"' -o Rscript \
  ./Rscript.c
config.status: creating src/main/Makefile
making CConverters.d from CConverters.c
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making apse.d from apse.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making base.d from base.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cov.d from cov.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making deriv.d from deriv.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making format.d from format.c
making eval.d from eval.c
making fourier.d from fourier.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making identical.d from identical.c
making inlined.d from inlined.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making model.d from model.c
making objects.d from objects.c
making optim.d from optim.c
making optimize.d from optimize.c
making options.d from options.c
making par.d from par.c
making paste.d from paste.c
making pcre.d from pcre.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making regex.d from regex.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making scan.d from scan.c
making saveload.d from saveload.c
making seq.d from seq.c
making serialize.d from serialize.c
making size.d from size.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making vfonts.d from vfonts.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making acosh.d from acosh.c
making asinh.d from asinh.c
making atanh.d from atanh.c
making mkdtemp.d from mkdtemp.c
making snprintf.d from snprintf.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
making vsnprintf.d from vsnprintf.c
making xspline.d from xspline.c
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c CConverters.c -o
CConverters.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c CommandLineArgs.c -o
CommandLineArgs.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c Rdynload.c -o
Rdynload.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c Renviron.c -o
Renviron.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c RNG.c -o RNG.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c apply.c -o apply.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c apse.c -o apse.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c arithmetic.c -o
arithmetic.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c array.c -o array.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c attrib.c -o attrib.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c base.c -o base.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c bind.c -o bind.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c builtin.c -o
builtin.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c character.c -o
character.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c coerce.c -o coerce.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c colors.c -o colors.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c complex.c -o
complex.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c connections.c -o
connections.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c context.c -o
context.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c cov.c -o cov.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c cum.c -o cum.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dcf.c -o dcf.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c datetime.c -o
datetime.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c debug.c -o debug.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c deparse.c -o
deparse.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c deriv.c -o deriv.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c devices.c -o
devices.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dotcode.c -o
dotcode.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dounzip.c -o
dounzip.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c dstruct.c -o
dstruct.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c duplicate.c -o
duplicate.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c engine.c -o engine.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c envir.c -o envir.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c errors.c -o errors.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c eval.c -o eval.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c format.c -o format.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c fourier.c -o
fourier.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c gevents.c -o
gevents.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c gram.c -o gram.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c gram-ex.c -o
gram-ex.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c graphics.c -o
graphics.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c identical.c -o
identical.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c inlined.c -o
inlined.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c internet.c -o
internet.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c iosupport.c -o
iosupport.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c lapack.c -o lapack.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c list.c -o list.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c localecharset.c -o
localecharset.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c logic.c -o logic.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c main.c -o main.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c mapply.c -o mapply.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c match.c -o match.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c memory.c -o memory.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c model.c -o model.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c names.c -o names.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c objects.c -o
objects.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c optim.c -o optim.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c optimize.c -o
optimize.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c options.c -o
options.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c par.c -o par.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c paste.c -o paste.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c pcre.c -o pcre.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c platform.c -o
platform.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c plot.c -o plot.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c plot3d.c -o plot3d.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c plotmath.c -o
plotmath.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c print.c -o print.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c printarray.c -o
printarray.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c printvector.c -o
printvector.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c printutils.c -o
printutils.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c qsort.c -o qsort.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c random.c -o random.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c regex.c -o regex.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c registration.c -o
registration.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c relop.c -o relop.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c rlocale.c -o
rlocale.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c saveload.c -o
saveload.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c scan.c -o scan.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c seq.c -o seq.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c serialize.c -o
serialize.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c size.c -o size.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c sort.c -o sort.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c source.c -o source.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c split.c -o split.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c sprintf.c -o
sprintf.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c startup.c -o
startup.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c subassign.c -o
subassign.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c subscript.c -o
subscript.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c subset.c -o subset.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c summary.c -o
summary.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c sysutils.c -o
sysutils.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c unique.c -o unique.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c util.c -o util.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c version.c -o
version.o
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c vfonts.c -o vfonts.o
gfortran  -fPIC  -g -O2 -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib
-install_name libR.dylib -compatibility_version 2.8.0  -current_version
2.8.1  -headerpad_max_install_names -o libR.dylib CConverters.o
CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o apse.o arithmetic.o
array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o
complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o
deparse.o deriv.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o
engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o
gram-ex.o graphics.o identical.o inlined.o internet.o iosupport.o lapack.o
list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o
names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o
platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o
printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o
saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o
startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o
util.o version.o vfonts.o xxxpr.o   ../unix/Rembedded.o ../unix/libunix.a
../appl/libappl.a ../nmath/libnmath.a ../extra/zlib/libz.a
../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a ../extra/intl/libintl.a
-framework vecLib -lgfortran    -Wl,-framework -Wl,CoreFoundation -lreadline
 -lm -lgomp -liconv
mkdir /Users/mike/Downloads/R-2.8.1/bin/exec
mkdir /Users/mike/Downloads/R-2.8.1/lib
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre  -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c Rmain.c -o Rmain.o
gcc -std=gnu99  -L/usr/local/lib -o R.bin Rmain.o -L../../lib -lR
making rotated.d from rotated.c
making dataentry.d from dataentry.c
making devX11.d from devX11.c
making rbitmap.d from rbitmap.c
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/X11/include  -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
dataentry.c -o dataentry.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/X11/include  -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
devX11.c -o devX11.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/X11/include  -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
rotated.c -o rotated.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/X11/include  -I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c
rbitmap.c -o rbitmap.o
gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
R_X11.so dataentry.o devX11.o rotated.o rbitmap.o -lSM -lICE  -L/usr/X11/lib
-lX11 -lXt -lXmu  -ljpeg  -L../../../lib -lR   -Wl,-framework
-Wl,CoreFoundation
mkdir /Users/mike/Downloads/R-2.8.1/modules
making internet.d from internet.c
making Rsock.d from Rsock.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c Rsock.c -o Rsock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c internet.c -o
internet.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c nanoftp.c -o
nanoftp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c nanohttp.c -o
nanohttp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c sock.c -o sock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2  -c sockconn.c -o
sockconn.o
gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
internet.so Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o
-L../../../lib -lR  -Wl,-framework -Wl,CoreFoundation
making Lapack.d from Lapack.c
making vecLibg95c.d from vecLibg95c.c
gfortran -fPIC  -g -O2 -ffloat-store -c dlamch.f -o dlamch.o
gfortran  -fPIC  -g -O2 -c dlapack0.f -o dlapack0.o
gfortran  -fPIC  -g -O2 -c dlapack1.f -o dlapack1.o
gfortran  -fPIC  -g -O2 -c dlapack2.f -o dlapack2.o
gfortran  -fPIC  -g -O2 -c dlapack3.f -o dlapack3.o
gfortran  -fPIC  -g -O2 -c dlapack4.f -o dlapack4.o
gfortran  -fPIC  -g -O2 -c cmplx.f -o cmplx.o
gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
libRlapack.dylib dlamch.o dlapack0.o dlapack1.o dlapack2.o dlapack3.o
dlapack4.o cmplx.o -install_name libRlapack.dylib -compatibility_version
2.8.0 -current_version 2.8.1  -headerpad_max_install_names -framework vecLib
-lgfortran -L../../../lib -lR
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c Lapack.c -o Lapack.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c vecLibg95c.c -o
vecLibg95c.o
gfortran  -fPIC  -g -O2 -c vecLibg95f.f -o vecLibg95f.o
gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
lapack.so  Lapack.o vecLibg95c.o vecLibg95f.o -L../../../lib -lR
 -Wl,-framework -Wl,CoreFoundation -L../../../lib -lRlapack -framework
vecLib -lgfortran
/Users/mike/Downloads/R-2.8.1/lib/libRlapack.dylib is unchanged
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c g_alab_her.c -o
g_alab_her.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c g_cntrlify.c -o
g_cntrlify.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c g_fontdb.c -o
g_fontdb.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H   -fPIC  -g -O2 -c g_her_glyph.c -o
g_her_glyph.o
gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -L../../../lib
-lR   -Wl,-framework -Wl,CoreFoundation
mkdir ../../library
building system startup profile
mkdir ../../../library/base
mkdir ../../../library/base/R
building package 'base'
mkdir ../../../library/base/demo
mkdir ../../../library/base/po
mkdir ../../../library/base/man
building package 'tools'
mkdir ../../../library/tools
mkdir ../../../library/tools/R
mkdir ../../../library/tools/po
mkdir ../../../library/tools/man
making Rmd5.d from Rmd5.c
making text.d from text.c
making init.d from init.c
making md5.d from md5.c
make[5]: `Makedeps' is up to date.
gcc -std=gnu99 -I../../../../include  -I/usr/local/include    -fPIC  -g -O2
-c text.c -o text.o
gcc -std=gnu99 -I../../../../include  -I/usr/local/include    -fPIC  -g -O2
-c init.c -o init.o
gcc -std=gnu99 -I../../../../include  -I/usr/local/include    -fPIC  -g -O2
-c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I../../../../include  -I/usr/local/include    -fPIC  -g -O2
-c md5.c -o md5.o
gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
tools.so text.o init.o Rmd5.o md5.o    -L../../../../lib -lR -Wl,-framework
-Wl,CoreFoundation
mkdir ../../../../library/tools/libs
building package 'utils'
mkdir ../../../library/utils
mkdir ../../../library/utils/R
mkdir ../../../library/utils/po
mkdir ../../../library/utils/Sweave
mkdir ../../../library/utils/misc
mkdir ../../../library/utils/man
building package 'grDevices'
mkdir ../../../library/grDevices
mkdir ../../../library/grDevices/R
mkdir ../../../library/grDevices/po
mkdir ../../../library/grDevices/afm
mkdir ../../../library/grDevices/enc
mkdir ../../../library/grDevices/man
making chull.d from chull.c
making devPicTeX.d from devPicTeX.c
making devNull.d from devNull.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
making init.d from init.c
making qdBitmap.d from qdBitmap.c
making qdPDF.d from qdPDF.c
making qdCocoa.d from qdCocoa.m
<built-in>:0: internal compiler error: Abort trap
Please submit a full bug report,
with preprocessed source if appropriate.
See <http://gcc.gnu.org/bugs.html> for instructions.
make[4]: *** [qdCocoa.d] Error 1
make[4]: *** Waiting for unfinished jobs....
make[3]: *** [all] Error 1
make[2]: *** [R] Error 1
make[1]: *** [R] Error 1
make: *** [R] Error 1



-- 
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
www.thatmike.com

Looking to arrange a meeting? Do so at:
http://www.timetomeet.info/with/mike/

~ Certainty is folly... I think. ~c

	[[alternative HTML version deleted]]

Mike Lawrence wrote:
> Hi all,
> I've encountered a build error with the latest R source (2.8.1). This
is a
> relatively fresh install of OS Leopard (10.5.6), latest developer tools
> installed, gcc/g++/gfortran version 4.4 installed (via
> http://hpc.sourceforge.net/, after which I updated the gcc & g++
symlinks to
> link to the 4.4 versions; gfortran used the 4.4 version without updating
the
> symlink).
> 
> Ultimately I wanted to instalI pnmath, so as per a previous thread (
> http://www.nabble.com/Parallel-R-tt18173953.html#a18196319) I built with:
> 
> LIBS=-lgomp ./configure --with-blas='-framework vecLib'
> make -j4
> 
> The configure runs without a hitch, but make fails, throwing an error
> seemingly related to qdCocoa:
> making qdCocoa.d from qdCocoa.m
> <built-in>:0: internal compiler error: Abort trap
> 
> Below is the output of configure, followed by the output of make (error is
> in the last 10 lines). Any suggestions to fix this would be greatly
> appreciated.
Ouch. As you probably realize, this is very Mac-specific, and the actual 
bug is in GCC and has nothing to do with R.

I don't think  there's any obvious way to fix this, but there might be a
temporary workaround. I'd consider making the .d file by hand, so that 
make doesn't even try to build it. You can probably rather easily create 
one based on one of the other .d files in the same directory (.d files 
are usually overkill, it is probably not necessary to get it completely 
right.)

Next question is whether this GCC can handle .m files at all....


> making qdBitmap.d from qdBitmap.c
> making qdPDF.d from qdPDF.c
> making qdCocoa.d from qdCocoa.m
> <built-in>:0: internal compiler error: Abort trap
> Please submit a full bug report,
> with preprocessed source if appropriate.
> See <http://gcc.gnu.org/bugs.html> for instructions.
> make[4]: *** [qdCocoa.d] Error 1
> make[4]: *** Waiting for unfinished jobs....
> make[3]: *** [all] Error 1
> make[2]: *** [R] Error 1
> make[1]: *** [R] Error 1
> make: *** [R] Error 1
> 
> 
> 

-- 
    O__  ---- Peter Dalgaard             ?ster Farimagsgade 5, Entr.B
   c/ /'_ --- Dept. of Biostatistics     PO Box 2099, 1014 Cph. K
  (*) \(*) -- University of Copenhagen   Denmark      Ph:  (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)              FAX: (+45) 35327907