R help - Oct 2001 - Re: Compiling R v 1.3.1 under Irix 6.5 on SGI Origin

Hello Laurent, Ray and Greg,

I tried the gmake settings.
Yet, I still got an Error code 1 message when I run the test. 

running regression tests
don't know how to make ../library/base/R/base (bu42).
*** Error code 1 (bu21)


Thanks you if you have any idea.

Manuel

 
 
 


-----Message d'origine-----
De : Laurent Gautier [ mailto:laurent at genome.cbs.dtu.dk
<mailto:laurent at genome.cbs.dtu.dk> ]
Envoy? : mercredi 24 octobre 2001 10:29
? : Greg Jefferis
Cc : Duval, Manuel; 'R-help at lists.R-project.org'
Objet : Re: [R] Re: Compiling R v 1.3.1 under Irix 6.5 on SGI Origin


Hello,


I had (and still have) to deal with SGIs and came across the similar
error message. I remember going through by setting MAKE=gmake in the
config.site file and by replacing the 'make ; make test; make install'
on
the command line by 'gmake; gmake test; gmake install'
(rem: If I remember well, on a SGI the test bit do not go too good... this
is (was ?) a reported bug).


Hopin' it helps,



Laurent







Laurent Gautier                 CBS, Building 208, DTU
PhD. Student                    D-2800 Lyngby,Denmark  
tel: +45 45 25 24 85            http://www.cbs.dtu.dk/laurent
<http://www.cbs.dtu.dk/laurent> 

On Tue, 23 Oct 2001, Greg Jefferis wrote:
> Hi,
>
> I wondered if anyone had shed some light on this as I have come on a
similar
> problem on another Origin.  The configure output looks like this
>
> > R is now configured for mips-sgi-irix6.5
> >
> > Source directory:          .
> > Installation directory:    /usr/local
> > C compiler:                gcc  -g -O2
> > C++ compiler:              c++  -g -O2
> > FORTRAN compiler:          g77  -g -O2
> >
> > X11 support:               yes
> > Gnome support:             no
> > Tcl/Tk support:            yes
> >
> > R profiling support:       yes
> > R as a shared library:     no
>
> and the make output looks like this around the failure point
>
>         gcc -I. -I../../../src/include -I../../../src/include
> -I/usr/local/include -DHAVE_CONFIG_H  -fPIC  -g -O2 -c nanohttp.c -o
> nanohttp.lo
>         gcc -I. -I../../../src/include -I../../../src/include
> -I/usr/local/include -DHAVE_CONFIG_H  -fPIC  -g -O2 -c sock.c -o sock.lo
>         gcc -I. -I../../../src/include -I../../../src/include
> -I/usr/local/include -DHAVE_CONFIG_H  -fPIC  -g -O2 -c sockconn.c -o
> sockconn.lo
>         gcc -shared  -o internet.so  Rsock.lo internet.lo nanoftp.lo
> nanohttp.lo sock.lo sockconn.lo
> making Lapack.d from Lapack.c
>         gcc -I. -I../../../src/include -I../../../src/include
> -I/usr/local/include -DHAVE_CONFIG_H  -fPIC  -g -O2 -c Lapack.c -o
Lapack.lo
>         g77  -fPIC  -g -O2 -c double.f -o double.lo
>         g77  -fPIC  -g -O2 -c cmplx.f -o cmplx.lo
> don't know how to make # (bu42).
> *** Error code 1 (bu21)
> *** Error code 1 (bu21)
> *** Error code 1 (bu21)
> *** Error code 1 (bu21)
>
>
> Many thanks for any hints,
>
> Greg Jefferis
>
>
> On 10/23/01 06:39, "Duval, Manuel" <Manuel.Duval at
pfizer.com> wrote:
>
> > Dear R contributors,
> >
> >
> > I recently dowloaded the R-1.3.1 on my SGi Origin 200 run by Irix6.5.
> > In order to instal it, I launched the command shown below:
> >
> > env MAKE=gmake ./configure
> >
> > The output was as follow::
> >
> > R is now configured for mips-sgi-irix6.5
> >
> > Source directory:          .
> > Installation directory:    /usr/local
> > C compiler:                cc  -OPT:IEEE_NaN_inf=ON -g
> > C++ compiler:              CC  -OPT:IEEE_NaN_inf=ON -g
> > FORTRAN compiler:          f77  -OPT:IEEE_NaN_inf=ON -g
> >
> > X11 support:               yes
> > Gnome support:             no
> > Tcl/Tk support:            no
> >
> > R profiling support:       yes
> > R as a shared library:     no
> >
> > Then, when I test the installatuion by invoking make check , I got the
> > following error message:
> >
> > [duval at svsgi4]/shome/d/duvalm/R-1.2.3/tests> make test-All
> > don't know how to make ../../library/base/R/base (bu42).
> > *** Error code 1 (bu21)
> > *** Error code 1 (bu21)
> > *** Error code 1 (bu21)
> >
> > Any clue to bypass this problem will be greatly appreciated.
> >
> > Sincerely
> >
> > Manuel
> >
> >
>
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> _.> _
>
> __________________________________________________________________________
> Greg Jefferis,                          Lab Address: Liqun Luo, Herrin 144
> Neurosciences PhD Programme &                e-mail: jefferis at
stanford.edu
> Dept Biological Sciences,                       Lab: (650) 725 5809
> Gilbert Biology Building,                       Fax: (650) 723 0589
> 371 Serra Mall,
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