Dear all, I was wondering how to read DNA sequences in R, is there a specific function and/or a specific package for that? Thank you very much in advance, Gian ** [[alternative HTML version deleted]]
Le 14/03/13 10:19, Gian Maria Niccol? Benucci a ?crit :> Dear all, > > I was wondering how to read DNA sequences in R, is there a specific > function and/or a specific package for that? > > Thank you very much in advance, > > Gian > ** >Before to write on the list, a simple google search brings you a lot of information. For example: https://a-little-book-of-r-for-bioinformatics.readthedocs.org/en/latest/src/chapter1.html Sincerely Marc Girondot -- __________________________________________________________ Marc Girondot, Pr Laboratoire Ecologie, Syst?matique et Evolution Equipe de Conservation des Populations et des Communaut?s CNRS, AgroParisTech et Universit? Paris-Sud 11 , UMR 8079 B?timent 362 91405 Orsay Cedex, France Tel: 33 1 (0)1.69.15.72.30 Fax: 33 1 (0)1.69.15.73.53 e-mail: marc.girondot at u-psud.fr Web: http://www.ese.u-psud.fr/epc/conservation/Marc.html Skype: girondot
On 03/14/2013 02:19 AM, Gian Maria Niccol? Benucci wrote:> Dear all, > > I was wondering how to read DNA sequences in R, is there a specific > function and/or a specific package for that? > > Thank you very much in advance,Bioconductor has many sequence-related packages; a basic starting point is http://bioconductor.org/packages/release/bioc/html/Biostrings.html Martin> > Gian > ** > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793