search for: sequences

Hi, I have the following sequence: in <- c(0, 0, 0, 2, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 2, 0, 2, 0, 0, 2) >From this sequence I would like to get to the following sequence: out <- c(0, 0, 0, 3, 3, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 0, 2, 0, 2, 0, 0, 2) Basically,

Dear all, I am trying to calculate a score for a string sequence consisting of the following four letters: ACGT. I have got a matrix giving the scores for each pair of letters. So for example the string ACCT has got the pairs: AC, CC and CT. The matrix has got the following form: names<-c("A","C","G","T"); mscore<-matrix(0,4,4);

Hi folks I have two data frames. I know that the nth (let's say the 7th) row in the first data frame (sequence) is there in the second (today.sequence). When I try to check that by doing 'sequence[7,] %in% today.sequence', I get all FALSE when it should be all TRUE. I'm certain I'm making some trivial mistake. Any solutions? The code to recreate the data frames and see

Hi, I'm having some problem with llvm-mc on a program after applying a pass: ../../../build/Release+Asserts/bin/clang -emit-llvm -c -I./testprof/ -I./src/headers/ -I../libtommath-0.42.0/ -Wall -Wsign-compare -W -Wshadow -Wno-unused-parameter -DLTC_SOURCE -O0 -DLTC_NO_ASM -DUSE_LTM -DLTM_DESC -o src/pk/asn1/der/sequence/der_encode_sequence_ex.bc

may some one please help me to sort this out, i am trying to writ a R code for calculating the frequencies of the amino acids in 9 different sequences, i want the code to read the sequence from external text file, i used the following code to do so: x<-read.table("sequence.txt",header=FALSE) then i defined an array for 20 amino acids as following: AA<-c('A','C','D','E','F','G','...

I am looking for help to analyze an unbalanced AB/BA cross-over design by requesting the type III SS ! # Example 3.1 from S. Senn (1993). Cross-over Trials in Clinical Research outcome<-c(310,310,370,410,250,380,330,270,260,300,390,210,350,365,370,310,380,290,260,90,385,400,410,320,340,220) subject<-as.factor(c(1,4,6,7,10,11,14,1,4,6,7,10,11,14,2,3,5,9,12,13,2,3,5,9,12,13))

I'm trying to map a network drive using my workplace's Win7 laptop to a fileserver at home. The Win7 laptop is joined to the work domain. The fileserver is my own standalone fileserver, not joined to any domain, and is configured to be accessible to everyone without authentcation. I'm not able to get this to work, with varying error messages from Windows ("The account is not

Something is adding a bogus comment string. Specifically " # %case^M18 ", where "^M" is a single ctrl-M character. The ^M is seen by the asm parser as an end-of-line, so the '18' is a new token at the start of a line, not part of the comment. Is your pass perhaps using label names which might include literal "^M" characters? -Jim On Jun 13, 2012, at

On Thu, 9 Feb 2017, Vitaly Kuznetsov wrote: > +#ifdef CONFIG_HYPERV_TSCPAGE > +static notrace u64 vread_hvclock(int *mode) > +{ > + const struct ms_hyperv_tsc_page *tsc_pg = > + (const struct ms_hyperv_tsc_page *)&hvclock_page; > + u64 sequence, scale, offset, current_tick, cur_tsc; > + > + while (1) { > + sequence = READ_ONCE(tsc_pg->tsc_sequence); > + if

On Thu, 9 Feb 2017, Vitaly Kuznetsov wrote: > +#ifdef CONFIG_HYPERV_TSCPAGE > +static notrace u64 vread_hvclock(int *mode) > +{ > + const struct ms_hyperv_tsc_page *tsc_pg = > + (const struct ms_hyperv_tsc_page *)&hvclock_page; > + u64 sequence, scale, offset, current_tick, cur_tsc; > + > + while (1) { > + sequence = READ_ONCE(tsc_pg->tsc_sequence); > + if

Hi, I was wondering the what would be the (most efficient) way to generate a sequence of sequences, i mean: if I have 1,2 and 3. I'd like to generate a sequence of length N*3 (N ~ 1,000,000 or more) Where random permutations of the sequence 1,2,3 follow each other. i.e 1,2,3,1,3,2,3,2,1 /!\ The thing is that there should never be twice the same number of in the same sub-sequence, meani...

I have independent event sequences for example as follows : Independent event sequence 1 : A , B , C , D Independent event sequence 2 : A, C , B Independent event sequence 3 :D, A, B, X,Y, Z Independent event sequence 4 :C,A,A,B Independent event sequence 5 :B,A,D I want to able to find that most common sequence patters...

Dear all, please could you suggest any R functions or packages (or external programs), that a. take as input a large number (> 10 000) of short 20-30 nt sequences, and do sequence assembly, to reconstruct larger (extended) 30-50 sequences ? b. take as input a larger number of sequences (100 000 - 1 mil) and cluster these sequences in distinct classes based on the sequence similarity ? thanks a lot, bogdan [[alternative HTML version deleted]]

On Thu, Feb 9, 2017 at 12:45 PM, KY Srinivasan <kys at microsoft.com> wrote: > > >> -----Original Message----- >> From: Thomas Gleixner [mailto:tglx at linutronix.de] >> Sent: Thursday, February 9, 2017 9:08 AM >> To: Vitaly Kuznetsov <vkuznets at redhat.com> >> Cc: x86 at kernel.org; Andy Lutomirski <luto at amacapital.net>; Ingo Molnar

On Thu, Feb 9, 2017 at 12:45 PM, KY Srinivasan <kys at microsoft.com> wrote: > > >> -----Original Message----- >> From: Thomas Gleixner [mailto:tglx at linutronix.de] >> Sent: Thursday, February 9, 2017 9:08 AM >> To: Vitaly Kuznetsov <vkuznets at redhat.com> >> Cc: x86 at kernel.org; Andy Lutomirski <luto at amacapital.net>; Ingo Molnar

In package fOptions, there are functions that generate Halton sequences. The van der Corput sequence for base 2 is a particular case of the Halton sequence generated by: n <- 8 # anything here... x <- runif.halton(n, 1) In fact, x <- runif.halton(n, dim) will generate the van der Corput sequences for the base b as the i-th prime number in x[,i]. (in other...

On Mon, Apr 7, 2014 at 12:09 PM, Joerg Sonnenberger <joerg at britannica.bec.de > wrote: > On Mon, Apr 07, 2014 at 08:38:58AM -0600, Richard wrote: > > Oops, meant to send this to the mailing list instead of to Reid > > privately. (Why cc the mailing list instead of just sending to the > > mailing list?) > > > > In article <CACs= >

Samba version is 3.0.10 on Gentoo linux. I am trying to use idmap_rid backend in a Windows AD environment, the Linux PC acting only as a domain member. I am using idmap_rid because I need UID/GID predictability. I can log in to console correctly, and it shows the right user and the "Domain Users" as the group. When I use default winbind TDB, I can browse the home directory from an XP

Dear RRRRRrrrrrrrrlist! I?ve got two lists which contain sets of DNA-sequences. They look something like this: List of 33 $ Cunonia_atrorubens : chr [1:247] "t" "t" "n" "t" ... $ Cunonia_balansae : chr [1:254] "t" "c" "c" "c" ... $ Cunonia_capensis...

Dear R-users, I'd like to create filenames in a mask "file000.dat" numbered from 1 to e.g. 123. The last problem I'm dealing with is creating the sequence of numbers with equal length, i.e. 001, 002,.... 023, 024,.... 122, 123. The closest I got is by a repetition: Sequence <- c(1:123) for(i in c(1:length(Sequence))) { print( paste(rep("0",