search for: bd0

...9;pnmath' ... ** libs ** arch - i386 gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/include/ i386 -msse3 -fopenmp -fPIC -g -O2 -march=nocona -c bd0.c -o bd0.o cc1: error: unrecognized command line option "-fopenmp" make: *** [bd0.o] Error 1 ** arch - ppc chmod: /Library/Frameworks/R.framework/Resources/library/pnmath/libs/ i386/*: No such file or directory gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- version-mi...

...is what happens: kjetil@kjetil-HP-Pavilion-dv4-Notebook-PC:~/R/src$ sudo R CMD INSTALL pnmath_0.0-4.tar.gz * installing to library ‘/usr/local/lib/R/site-library’ * installing *source* package ‘pnmath’ ... ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -O2 -pipe -g -c bd0.c -o bd0.o ... ... ... installing to /usr/local/lib/R/site-library/pnmath/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) :...

...try... pnmath failed: ... gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- version-min=10.4 -std=gnu99 -dynamiclib -Wl,- headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/ lib -o pnmath.so bd0.o beta.o chebyshev.o choose.o d1mach.o dbeta.o dbinom.o dcauchy.o dchisq.o dexp.o df.o dgamma.o dgeom.o dhyper.o dlnorm.o dlogis.o dnbeta.o dnbinom.o dnchisq.o dnf.o dnorm.o dnt.o dpois.o dt.o dunif.o dweibull.o fmax2.o fmin2.o ftrunc.o gamma.o gamma_cody.o i1mach.o imax2.o imin2.o lbeta.o...

...ude -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c signrank.c -o signrank.o rm -rf libnmath.a ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df...

...rom ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k....

Hi Thomas, thank you for your help. This is very strange that it wont work here. can you doveconf -n the relevant parts especially mail_plugins= and plugin { } i think i have misconfigured something :( Regards, Daniel

Dear all, we received a bug report for betareg, that in some cases the optim call in betareg.fit would hang the R session and the command cannot be interrupted by Ctrl-C? We narrowed down the problem to the dbeta function which is used for the log likelihood evaluation in betareg.fit. Particularly, the following command hangs the R session to a 100% CPU usage in all systems we tried it (OS X

...countered an error running "make -n" with the libtre library not generating libtre.a: *rm -rf libnmath.a* *ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnor...

...rom ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k....

Please note that building R on Windows is documented in "R Installation and Administration", including links to external software. Particularly there is a link to texinfo which is part of Rtools. The documentation is maintained and it is a sufficient source of information for building R on Windows. https://cran.r-project.org/doc/manuals/r-release/R-admin.html

...rom sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k....

...rom sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k....

..... [B90] 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ........ ........ [BA0] 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ........ ........ [BB0] 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ........ ........ [BC0] 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ........ ........ [BD0] 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ........ ........ [BE0] 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ........ ........ [BF0] 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ........ ........ [C00] 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ........ ........ [C10] 00...

...rom sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k....

..... [B90] 65 B1 FB 2F 01 FF 80 B3 00 01 00 7F FB FF 00 F8 e../.... ........ [BA0] F6 00 02 1F FF FF D8 00 F9 FF 02 FF FF F8 E4 00 ........ ........ [BB0] 03 00 00 00 03 FD FF 03 FF FF FF C0 91 00 03 03 ........ ........ [BC0] FE 00 00 C1 5A 00 F8 6D C1 01 00 F8 63 C0 01 F8 ....Z..m ....c... [BD0] 65 B1 FB 2F 01 FF 80 B3 00 01 00 7F FB FF 00 FF e../.... ........ [BE0] F6 00 02 1F FF FF D8 00 F9 FF 02 FF FF F8 E4 00 ........ ........ [BF0] 03 00 00 00 03 FD FF 03 FF FF FF F8 91 00 03 03 ........ ........ write_socket(3,3135) write_socket(3,3135) wrote 3135 got smb length of 35 size=35...

...rom sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k....