Mike Lawrence
2008-Jul-10 18:27 UTC
[R] compiling pnmath on an intel processor running mac OS 10.5
Has anyone successfully compiled pnmath (http://www.stat.uiowa.edu/~luke/R/experimental ) for an intel processor running mac OS 10.5? When I attempt to do so via the R package installer (choosing "Local Source Package" and pointing to the pnmath_0.0-2.tar.gz file), I get the following errors: * Installing *source* package 'pnmath' ... ** libs ** arch - i386 gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/include/ i386 -msse3 -fopenmp -fPIC -g -O2 -march=nocona -c bd0.c -o bd0.o cc1: error: unrecognized command line option "-fopenmp" make: *** [bd0.o] Error 1 ** arch - ppc chmod: /Library/Frameworks/R.framework/Resources/library/pnmath/libs/ i386/*: No such file or directory gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/include/ ppc -I/usr/local/include -fopenmp -fPIC -g -O2 -c bd0.c -o bd0.o cc1: error: unrecognized command line option "-fopenmp" make: *** [bd0.o] Error 1 chmod: /Library/Frameworks/R.framework/Resources/library/pnmath/libs/ ppc/*: No such file or directory ERROR: compilation failed for package 'pnmath' ** Removing '/Library/Frameworks/R.framework/Resources/library/pnmath' -- Mike Lawrence Graduate Student, Department of Psychology, Dalhousie University www.memetic.ca "The road to wisdom? Well, it's plain and simple to express: Err and err and err again, but less and less and less." - Piet Hein
Luke Tierney
2008-Jul-10 19:04 UTC
[R] compiling pnmath on an intel processor running mac OS 10.5
You need a gcc version that supports OpenMP; I believe that means gcc 4.2 or later. pnmath0 should work with older gcc versions. luke On Thu, 10 Jul 2008, Mike Lawrence wrote:> Has anyone successfully compiled pnmath > (http://www.stat.uiowa.edu/~luke/R/experimental) for an intel processor > running mac OS 10.5? When I attempt to do so via the R package installer > (choosing "Local Source Package" and pointing to the pnmath_0.0-2.tar.gz > file), I get the following errors: > > * Installing *source* package 'pnmath' ... > ** libs > ** arch - i386 > gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk > -mmacosx-version-min=10.4 -std=gnu99 > -I/Library/Frameworks/R.framework/Resources/include > -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -fopenmp > -fPIC -g -O2 -march=nocona -c bd0.c -o bd0.o > cc1: error: unrecognized command line option "-fopenmp" > make: *** [bd0.o] Error 1 > ** arch - ppc > chmod: /Library/Frameworks/R.framework/Resources/library/pnmath/libs/i386/*: > No such file or directory > gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk > -mmacosx-version-min=10.4 -std=gnu99 > -I/Library/Frameworks/R.framework/Resources/include > -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include > -fopenmp -fPIC -g -O2 -c bd0.c -o bd0.o > cc1: error: unrecognized command line option "-fopenmp" > make: *** [bd0.o] Error 1 > chmod: /Library/Frameworks/R.framework/Resources/library/pnmath/libs/ppc/*: > No such file or directory > ERROR: compilation failed for package 'pnmath' > ** Removing '/Library/Frameworks/R.framework/Resources/library/pnmath' > > > > -- > Mike Lawrence > Graduate Student, Department of Psychology, Dalhousie University > > www.memetic.ca > > "The road to wisdom? Well, it's plain and simple to express: > Err and err and err again, but less and less and less." > - Piet Hein > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.-- Luke Tierney Chair, Statistics and Actuarial Science Ralph E. Wareham Professor of Mathematical Sciences University of Iowa Phone: 319-335-3386 Department of Statistics and Fax: 319-335-3017 Actuarial Science 241 Schaeffer Hall email: luke at stat.uiowa.edu Iowa City, IA 52242 WWW: http://www.stat.uiowa.edu
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