Hello My colleagues asked me to install "R" with module "shiny". R version 3.0.1 compiled fine on Solaris 10 and is running well. I tried to install "shiny". With the dependencies "Rcpp" should be installed before. But the compile step did fail. See below. The initial error message is "Error in dyn.load(file, DLLpath = DLLpath, ...) :" Before there are some warning. The final problem is, that the shared library Rcpp.so was not generated. I am not familiar with R but I could manage to compile a lot of source code on Solaris. Very often it's only a small change in Makefile or source code. Is there a way to compile "Rcpp" manually ? Or how-to fix this problem. I am sure, it's not a major issue. Kind regards Hans # R R version 3.0.1 (2013-05-16) -- "Good Sport" Copyright (C) 2013 The R Foundation for Statistical Computing Platform: sparc-sun-solaris2.10 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.> install.packages('Rcpp')--- Please select a CRAN mirror for use in this session --- trying URL 'http://cran.rstudio.com/src/contrib/Rcpp_0.10.3.tar.gz' Content type 'application/x-gzip' length 2395986 bytes (2.3 Mb) opened URL =================================================downloaded 2.3 Mb * installing *source* package 'Rcpp' ... ** package 'Rcpp' successfully unpacked and MD5 sums checked ** libs g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include -fPIC -g -O2 -c Date.cpp -o Date.o Date.cpp: In member function `void Rcpp::Date::update_tm()': Date.cpp:108: warning: converting to `time_t' from `double' Date.cpp: In member function `double Rcpp::Date::mktime00(tm&) const': Date.cpp:134: warning: converting to `int' from `double' Date.cpp:137: warning: converting to `int' from `double' Date.cpp: In function `Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)': Date.cpp:164: warning: converting to `time_t' from `double' Date.cpp: In function `int Rcpp::operator-(const Rcpp::Date&, const Rcpp::Date&)': Date.cpp:170: warning: converting to `int' from `double' Date.cpp: In function `tm* Rcpp::timesub(const time_t*, long int, const Rcpp::state*, tm*)': Date.cpp:1523: warning: converting to `long int' from `double' g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include -fPIC -g -O2 -c Module.cpp -o Module.o gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include -fPIC -g -O2 -c Rcpp_init.c -o Rcpp_init.o g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include -fPIC -g -O2 -c Timer.cpp -o Timer.o g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include -fPIC -g -O2 -c api.cpp -o api.o g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include -fPIC -g -O2 -c attributes.cpp -o attributes.o attributes.cpp: In member function `std::vector<Rcpp::attributes::Param, std::allocator<Rcpp::attributes::Param> > Rcpp::attributes::SourceFileAttributesParser::parseParameters(const std::string&)': attributes.cpp:986: warning: converting of negative value `-0x00000000000000001' to `size_t' g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include -fPIC -g -O2 -c barrier.cpp -o barrier.o g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include -fPIC -g -O2 -c exceptions.cpp -o exceptions.o g++ -shared -L/usr/local/lib -L/usr/sfw/lib -L/opt/sfw/lib -L/opt/solarisstudio12.3/lib -L/opt/solarisstudio12.3/prod/lib -o Rcpp.so Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o g++ -o libRcpp.so Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o -shared ar qc libRcpp.a Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o cp libRcpp.so ../inst/lib cp libRcpp.a ../inst/lib rm libRcpp.so libRcpp.a installing to /usr/local/lib/R/library/Rcpp/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'Rcpp-FAQ.Rnw' 'Rcpp-attributes.Rnw' 'Rcpp-extending.Rnw' 'Rcpp-introduction.Rnw' 'Rcpp-modules.Rnw' 'Rcpp-package.Rnw' 'Rcpp-quickref.Rnw' 'Rcpp-sugar.Rnw' 'Rcpp-unitTests.Rnw' ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/local/lib/R/library/Rcpp/libs/Rcpp.so': ld.so.1: R: fatal: relocation error: file /usr/local/lib/R/library/Rcpp/libs/Rcpp.so: symbol backtrace: referenced symbol not found Error: loading failed Execution halted ERROR: loading failed * removing '/usr/local/lib/R/library/Rcpp' The downloaded source packages are in '/tmp/RtmpfijlH9/downloaded_packages' Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning message: In install.packages("Rcpp") : installation of package 'Rcpp' had non-zero exit status>[[alternative HTML version deleted]]
Hello My colleagues asked me to install "R" with module "shiny". R version 3.0.1 compiled fine on Solaris 10 and is running well. I tried to install "shiny". With the dependencies "Rcpp" should be installed before. But the compile step did fail. See below. The initial error message is "Error in dyn.load(file, DLLpath = DLLpath, ...) :" Before there are some warning. The final problem is, that the shared library Rcpp.so was not generated. I am not familiar with R but I? could manage to compile a lot of source code on Solaris. Very often it's only a small change in Makefile or source code. Is there a way to compile "Rcpp" manually ? Or how-to fix this problem. I am sure, it's not a major issue. Kind regards Hans # R R version 3.0.1 (2013-05-16) -- "Good Sport" Copyright (C) 2013 The R Foundation for Statistical Computing Platform: sparc-sun-solaris2.10 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.> install.packages('Rcpp')--- Please select a CRAN mirror for use in this session --- trying URL 'http://cran.rstudio.com/src/contrib/Rcpp_0.10.3.tar.gz' Content type 'application/x-gzip' length 2395986 bytes (2.3 Mb) opened URL =================================================downloaded 2.3 Mb * installing *source* package 'Rcpp' ... ** package 'Rcpp' successfully unpacked and MD5 sums checked ** libs g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include??? -fPIC? -g -O2? -c Date.cpp -o Date.o Date.cpp: In member function `void Rcpp::Date::update_tm()': Date.cpp:108: warning: converting to `time_t' from `double' Date.cpp: In member function `double Rcpp::Date::mktime00(tm&) const': Date.cpp:134: warning: converting to `int' from `double' Date.cpp:137: warning: converting to `int' from `double' Date.cpp: In function `Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)': Date.cpp:164: warning: converting to `time_t' from `double' Date.cpp: In function `int Rcpp::operator-(const Rcpp::Date&, const Rcpp::Date&)': Date.cpp:170: warning: converting to `int' from `double' Date.cpp: In function `tm* Rcpp::timesub(const time_t*, long int, const Rcpp::state*, tm*)': Date.cpp:1523: warning: converting to `long int' from `double' g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include??? -fPIC? -g -O2? -c Module.cpp -o Module.o gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include??? -fPIC? -g -O2? -c Rcpp_init.c -o Rcpp_init.o g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include??? -fPIC? -g -O2? -c Timer.cpp -o Timer.o g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include??? -fPIC? -g -O2? -c api.cpp -o api.o g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include??? -fPIC? -g -O2? -c attributes.cpp -o attributes.o attributes.cpp: In member function `std::vector<Rcpp::attributes::Param, std::allocator<Rcpp::attributes::Param> > Rcpp::attributes::SourceFileAttributesParser::parseParameters(const std::string&)': attributes.cpp:986: warning: converting of negative value `-0x00000000000000001' to `size_t' g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include??? -fPIC? -g -O2? -c barrier.cpp -o barrier.o g++ -I/usr/local/lib/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I/usr/sfw/include -I/opt/sfw/include??? -fPIC? -g -O2? -c exceptions.cpp -o exceptions.o g++ -shared -L/usr/local/lib -L/usr/sfw/lib -L/opt/sfw/lib -L/opt/solarisstudio12.3/lib -L/opt/solarisstudio12.3/prod/lib -o Rcpp.so Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o g++ -o libRcpp.so Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o -shared ar qc libRcpp.a Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o cp libRcpp.so ../inst/lib cp libRcpp.a ../inst/lib rm libRcpp.so libRcpp.a installing to /usr/local/lib/R/library/Rcpp/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ?? 'Rcpp-FAQ.Rnw' ?? 'Rcpp-attributes.Rnw' ?? 'Rcpp-extending.Rnw' ?? 'Rcpp-introduction.Rnw' ?? 'Rcpp-modules.Rnw' ?? 'Rcpp-package.Rnw' ?? 'Rcpp-quickref.Rnw' ?? 'Rcpp-sugar.Rnw' ?? 'Rcpp-unitTests.Rnw' ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : ? unable to load shared object '/usr/local/lib/R/library/Rcpp/libs/Rcpp.so': ? ld.so.1: R: fatal: relocation error: file /usr/local/lib/R/library/Rcpp/libs/Rcpp.so: symbol backtrace: referenced symbol not found Error: loading failed Execution halted ERROR: loading failed * removing '/usr/local/lib/R/library/Rcpp' The downloaded source packages are in ??????? '/tmp/RtmpfijlH9/downloaded_packages' Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning message: In install.packages("Rcpp") : ? installation of package 'Rcpp' had non-zero exit status>