search for: rnw

Hello everyone. I am in the process of writing a book in Latex with Texshop, on Mac. This book contains a lot of R code, hence the need to use Sweave. I was able to compile Rnw files, and to sync back and forth from the pdf to the source Rnw. My problem now is that the book is divided in Chapters, and every chapter is in its own Rnw file. I can compile them from the main one (book.Rnw) using the directive \SweaveInput{chapter1.Rnw} The problem stands in the fact that li...

Hello, I'm still trying to make the life of my colleagues easier. Nice, isn't it ? At the moment, I'm looking for a way to generate multiple "single report". In fact I have a .rnw file which send a query to a MySQL database (rs<-dbSendQuery(con, statement="select * from treatdata where name='Device1'") But of course my colleagues have many devices and don't want to enter the rnw file to change the name of the device. Is there a way to pass argument...

Dear list, I have tried to setup my Xemacs for use with Sweave, which I indend to learn. I have followed the instructions in the Sweave FAQ, that is to say, I put (defun Rnw-mode () (require 'ess-noweb) (noweb-mode) (if (fboundp 'R-mode) (setq noweb-default-code-mode 'R-mode))) (add-to-list 'auto-mode-alist '("\\.Rnw\\'" . Rnw-mode)) (add-to-list 'auto-mode-alist '("\\.Snw\\'" . Rnw-mode)) (setq refte...

Dear HelpeRs, I'm very fond of Sweave and I use it as often as possible. It'a a pity I can't use it for larger projects or can I? For instance suppose I have three files file1.rnw, file2.rnw and file3.rnw with Sweave code. Working on file2.rnw I whould like to exclude file1.rnw and file3.rnw temporarily and joining all of them later. This amounts to a mechanism similar to using LaTeX's \include command. *Is* there a way to achieve that? Thank you in advance. D. Tren...

It is stated in R-exts that Sweave files (.Rnw) are either processed in /vignettes or /inst/doc, not both. Furthermore, it is stated that external manuals and other files in /inst/doc will be installed. This behaviour has been used to deal with the situation where a package has two "vignettes", one that is easily processed and one t...

...SweaveInput{} instruction? I'd like to create some reusable "template modules" of Sweave code and put them in a standard directory like /Resources/Affymetrix Then the corresponding file that uses one of these would include a command like \SweaveInput{/Resources/Affymetrix/libload.Rnw} If I try that (in R 2.4.0 on either Windows or UNIX), however, I get an error message to the following effect: -------------------------------- Writing to file affyExample.tex Processing code chunks ... Error in SweaveReadFile(c(ifile, file), syntax) : no Sweave file with name './/Resources...

Hello! I was just wondering if Sweave can work with \input or \include LaTeX commands. So, is it aware of such a possible hierarchy in documents. I would test that, but I don't have such a report available at the moment. I thought of that when I was writting shell script for Sweave from command line and I have solved that part there. -- Lep pozdrav / With regards, Gregor GORJANC

...sible to include both Sweave and knitr vignettes in a single package. I'm wondering if anyone has tried this and/or if there are some hidden gotchas putting this into practice, and concerned about creating problems with CRAN checks if I try this. Consider two vignettes: pkg/vignettes/vign1.Rnw, containing: % !Rnw weave = Sweave %\VignetteEngine{Sweave} ... pkg/vignettes/vign2.Rnw, containing: % !Rnw weave = knitr %\VignetteEngine{knitr::knitr} ... both are .Rnw files, distinguished only by \VignetteEngine. vign1.Rnw is currently in my package, and vign2.Rnw compiles OK outside it, usi...

...stR? version ?0.8-0? * checking CRAN incoming feasibility ... NOTE Maintainer: ?Randall Pruim <rpruim at calvin.edu>? Package has a VignetteBuilder field but no prebuilt vignette index. NOTE: There was 1 note. $ tar -tf fastR_0.8-0.tar.gz | grep inst/doc fastR/inst/doc/ fastR/inst/doc/Errata.Rnw fastR/inst/doc/Errata.pdf fastR/inst/doc/Updates.R fastR/inst/doc/Updates.Rnw fastR/inst/doc/Updates.pdf fastR/inst/doc/index.html There is an index.html in the tar ball. And If I install the package from the tar ball, the index appears as it should in the package. I would be happy with the aut...

Hi fellow R-users, Are there any text editors that recognize sweave (.rnw) files? I am running Windows Vista and in the past I used Tinn-R for R files but it (surprisingly) doesn't recognize rnw files and does not do any syntax highlighting for them. Thanks in advance, Greg __________________________________________________________________ Make your browsin...

Hi list, I need to process a Rnw file and and a csv file (both are encoded in UTF-8) under Windows XP (R Version 2.11.0, i386, mingw32). I can source and run the Rnw file: > Stangle("Bericht.Rnw") Writing to file Bericht.R > source(file("Bericht.R", encoding="UTF-8")) which runs fine, but ru...

Depending on an R computation I would like to include an Sweave documents in the main Sweave document. How can I do it? So I was thinking .... to use Latex features : \newif\ifpaper \ifpaper \SweaveInput{"my1.Rnw"} \else \SweaveInput{"my2.Rnw"} \fi But how do I set paper to true or false given an \Sexpr ?? \papertrue % or \paperfalse Any ideas? cheers -- Witold Eryk Wolski Triemlistrasse 155 8047 Zuerich [[alternative HTML version deleted]]

...istr-pareto" [16] "probdistr-student" See the information on INDEX files and package subdirectories in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. The warning tells me \VignetteIndexEntry is missing however there is one in probdistr-main.Rnw (Sweave file calling all other files via \SweaveInput{probdistr-XXXXX}). Let us note this file is not listed in the above files... But the build is ok * checking for file 'pkg/DESCRIPTION' ... OK * preparing 'pkg': * checking DESCRIPTION meta-information ... OK * installing th...

Dear R-specialists, I am trying to create a Makefile that will first convert all my .Rnw files into .tex files and then, that will run the LaTeX compiler to produce a pdf document. This issue has been discussed before. Hence, I've basically adapted a Makefile I found at http://n4.nabble.com/R-Sweave-R-and-complex-latex-projects-td810020.html#a810023 to make it compatible with...

I've noticed a change in behavior in R 2.12.0 from 2.11.1 regarding the treatment of absolute paths in the file argument of Sweave in a Windows environment. Consider the minimal Rnw file, attached and reproduced below my signature in case .Rnw files get stripped. This file is stored on my (Windows) computer in H:/My Documents. Using an absolute path with the standard window's escaped backslahes path gives an error: > Sweave("H:\\My Documents\\test.Rnw")...

...o use this as an indirect test, ie. "if timings is 10 then this must be CRAN running". My biggest time offender is in the vignettes. After multiple readings of the docs I still can't quite figure out how to specify - pdf files that should be in the vignettes index, but are not .Rnw source - how to tell R which ones to redo, and which to just accept the pdf - per the policy line "all source for pdf should be available", non-inclusion of the Rnw file isn't an answer. Again, is there another document I'm missing? Terry T.

Hello, I found my Rnw file generated strange symbols in pdf file. For instance, on page 4 of the following file, http://cran.r-project.org/web/packages/cts/vignettes/kf.pdf you can see Belcher et~al on line 2, and Figure~1 on line 5. The symbol ~ should not appear in the pdf file although the symbol was in the origi...

...f R CMD Sweave, confirming your 'deletes non tex files created upon batch mode exit' So this is not related to OSX only, but also a big problem at least on other *nix descendent platforms, such as Linux. In short, failure (no graphic produce in the example below) by R CMD Sweave foo.Rnw but all is fine with using Sweave(), as you Marc, noted, and hence with Rscript -e 'Sweave("foo.Rnw")' ... and to answer your question: No this was not intended and is probably one of the bigger / most embarrassing bugs in a newly released version of R in my view: Bas...

Hi all. To automate the production of a document I want to have something like: test.tex : test.Rnw "Sweave("test.Rnw") "| R --no-restore --no-save in a makefile. This however gives an error as R states: Sweave("test.Rnw") : not found. I use R-1.9.0pat (040424 I think) on Win XP. Any suggestions, hints or plain help appreciated. Steen Ladelund [[alte...

Dear expeRts, I have a master file master.tex containing the preamble and which inputs (via \input{chapter01}, \input{chapter02}, ...) chapters. The chapters are .Rnw files. My goal is to use patchDVI::SweavePDF to compile the chapters (say, chapter.Rnw) individually (each chapter starts with sourcing Sweave preliminary settings). The first problem is the following. If I execute (in the shell) ,---- | Rscript -e "patchDVI::SweavePDF('chapter.Rnw')...