R help - Feb 2013 - Problem loading hdf5 file

*Hi everyone, I am a new subscriber, so I hope I'm posting in the right way.
I need to load a hdf5 file, so I installed the hdf5 libraries ad the hdf5 R
package; in downloaded a small sample file from the hdf5 website and I
could correctly load it. But when I try to load my file:
*
require(hdf5)
rm(list=ls())
ls()
hdf5load("my_file.h5", verbosity=3)

*I get this error message:
*
Errore in hdf5load("my_file.h5", verbosity = 1) : unable to open HDF
file:
my_file.h5
>
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: /Builds/unix/hdf5-1.8.4-patch1/src/H5F.c line 1514 in H5Fopen():
unable to open file
    major: File accessability
    minor: Unable to open file

  #001: /Builds/unix/hdf5-1.8.4-patch1/src/H5F.c line 1218 in H5F_open():
unable to open file
    major: File accessability
    minor: Unable to open file

  #002: /Builds/unix/hdf5-1.8.4-patch1/src/H5FD.c line 1079 in H5FD_open():
open failed
    major: Virtual File Layer
    minor: Unable to initialize object

  #003: /Builds/unix/hdf5-1.8.4-patch1/src/H5FDsec2.c line 365 in
H5FD_sec2_open(): unable to open file
    major: File accessability
    minor: Unable to open file

  #004: /Builds/unix/hdf5-1.8.4-patch1/src/H5FDsec2.c line 365 in
H5FD_sec2_open(): No such file or directory
    major: Internal error (too specific to document in detail)
    minor: System error message

*I really can't see the problem. I get the same error both with OSX and
Ubuntu; could it simply be that the file is too large? In that case, what
could I try to do?

Thanks in advance,*
*
*
*Flavio*

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*I'm sorry, in some way I didn't see I was in the wrong directory. *
*The real error message is the following:*

hdf5_global_verbosity=3 load=1

Processing object: DNS ...... which is a Group

Processing object: BEAM ...... its a dataset...Dataset has ID83886084

Dataset has tid 50331968

Dataset has space id 67108870

Dataset has rank 2

Dataset has dims/maxdims: 4720  3184 / -1  -1

Allocating matrix with rank=2 dim=4720 0

calling vector_io. Hangs here with big datsets

Errore in hdf5load("RM-2007-GRAD-2048.St0.0.h5", verbosity = 3) :

  Can't get type for R type: 19 (IO)



2013/2/4 Flavio Pons <flavio.pons@gmail.com>
> *Hi everyone, I am a new subscriber, so I hope I'm posting in the right
> way.
> I need to load a hdf5 file, so I installed the hdf5 libraries ad the hdf5
> R package; in downloaded a small sample file from the hdf5 website and I
> could correctly load it. But when I try to load my file:
> *
> require(hdf5)
> rm(list=ls())
> ls()
> hdf5load("my_file.h5", verbosity=3)
>
> *I get this error message:
> *
> Errore in hdf5load("my_file.h5", verbosity = 1) : unable to open
HDF file:
> my_file.h5
>
> >
>
> HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
>   #000: /Builds/unix/hdf5-1.8.4-patch1/src/H5F.c line 1514 in H5Fopen():
> unable to open file
>     major: File accessability
>     minor: Unable to open file
>
>   #001: /Builds/unix/hdf5-1.8.4-patch1/src/H5F.c line 1218 in H5F_open():
> unable to open file
>     major: File accessability
>     minor: Unable to open file
>
>   #002: /Builds/unix/hdf5-1.8.4-patch1/src/H5FD.c line 1079 in
> H5FD_open(): open failed
>     major: Virtual File Layer
>     minor: Unable to initialize object
>
>   #003: /Builds/unix/hdf5-1.8.4-patch1/src/H5FDsec2.c line 365 in
> H5FD_sec2_open(): unable to open file
>     major: File accessability
>     minor: Unable to open file
>
>   #004: /Builds/unix/hdf5-1.8.4-patch1/src/H5FDsec2.c line 365 in
> H5FD_sec2_open(): No such file or directory
>     major: Internal error (too specific to document in detail)
>     minor: System error message
>
> *I really can't see the problem. I get the same error both with OSX and
> Ubuntu; could it simply be that the file is too large? In that case, what
> could I try to do?
>
> Thanks in advance,*
> *
> *
> *Flavio*
>
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