Displaying 20 results from an estimated 300 matches similar to: "Problem loading hdf5 file"
2011 Mar 04
2
Fixing the HDF5 package: the on.exit mystery
Dear all,
I'm trying to fix a subtle bug in the hdf5 package. This package provides an
interfaces to the HDF5 library and hence allows one to load data into R from
files in the HDF5 format. The bug appeared during a period in which R changed
but the package did not.
I include below both the R and C code, stripped of everything except what is
needed to show the bug. What is supposed to
2014 Oct 29
1
Upgrade to CentOS6.6: mpich dep error
Hello there,
I'm checking if I can upgrade safely from CentOS6.5 to 6.6 using yum,
and here's what it says:
=====================
[snip]
--> Finished Dependency Resolution
--> Running transaction check
---> Package kernel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased
---> Package kernel-devel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased
---> Package
1997 Aug 13
2
R-beta: patches
I've loaded R-0.50-a1 but when I try to apply the patches it cannot find the files to apply patches to.
[9] gilp/R0.50 : patch <R-0.50-a1.patch1
Looks like a new-style context diff.
File to patch:
[10] gilp/R0.50 :
[10] gilp/R0.50 :
[10] gilp/R0.50 : cd R-0.50-a1
[11] gilp/R0.50/R-0.50-a1 : ls
CHANGES RESOURCES configure.mac*
COPYING TASKS configure.win*
COPYRIGHTS TASKS.OLD
2009 Nov 13
1
R and HDF5 Question
Hello All,
I just signed up to this list, so I apologize if this question has been
asked before.
I am trying to load an hdf5 file into R and running into some problems. Here
are the steps I took to configure my environment:
* R 2.10.0 (x64) on Mac OS X 10.6
* hdf5 1.8.3 installed via macports
* hdf5_1.6.9.tar.gz from CRAN
I suspect the problem I am having relates to
2009 Mar 19
2
Package HDF5
The package works fine, but it seems not to provide access to fields,
but only to the whole data in a certain file (function hdf5load(file,
load = TRUE, verbosity = 0, tidy = FALSE))
Since hdf5 organizes the data and metadata in a hierarchical
structure, we must explore in our problem (file>7GB), but it seems not
possible with the functions in the package.
Any suggestions? Please, let me know
2004 Jul 01
1
[LLVMdev] Add assert in llvm::StroreInst::init and llvm::LoadInst::init
I'm make silly error (swap arguments in llvm::StroreInst constructor call:
llvm::Value* var = genExpr(bb,*varExpr,false);
llvm::Value* val = genExpr(bb,*valExpr,true );
llvm::StoreInst* lStore = new llvm::StoreInst(var,val,bb);
instead
assert(var && var->getType()->getTypeID()==llvm::Type::PointerTyID && "var
side isn't pointer type");
llvm::StoreInst*
2009 Dec 14
2
hdf5 package
Hi all,
I'm testing the use of the hdf5 R library under Windows XP.
With some simple example (an R list with several subobjects as showed in
the examples in the library) the library exports and imports .hdf files
adequately. However, if I try to open the exported file with another
program (HDFView 2.5) I receive the message that the file is an
unsupported format. HDFView 2.5 does not seems to
2018 May 10
2
[RFC] MC support for variant scheduling classes.
Hi all,
The goal of this RFC is to make information related to variant scheduling
classes accessible at MC level. This would help tools like llvm-mca
understand/resolve variant scheduling classes.
To achieve this goal, I plan to introduce a new class of scheduling
predicates
named MCSchedPredicate. An MCSchedPredicate allows the definition of boolean
expressions with a well-known semantic, that
2002 Mar 01
1
Building hdf5 on Windows
Hi all,
I try to use the hdf5 package. I downloaded the Windows binary version, and
it claims it requires hdf5dll.dll library, so I download the whole hdf5
1.4.3 package from NCSA. Unfortunatelly, it crashes R. I suspect it is
because the package was probably compiled against version 1.2 of hdf5 (as
evoked in the help file?) or any other previous version, so I downloaded the
source of the package
2012 Nov 09
4
Usage of puppet to deploy and configuration manage software patches
I have some questions in terms of how to use puppet of configuration
management for software patches. My previous approach was it to create a
puppet module for each patch ... Like Patch1 includes (FileA, FileB,
FileC), Patch2 includes (FileD, FileE)... So far so good and that works but
now i have to create a Patch3 with lets say FileF and FileA included. As
you can see there will be a puppet
2005 Jan 28
1
fbsd not vulnerable to recent bind issues?
Hi,
Recently some security issues with bind have come up.
NetBSD patched it's version of 9.3.0:
http://mail-index.netbsd.org/source-changes/2005/01/27/0009.html
Is the version in RELENG_5 not affected?
(ftp://ftp.isc.org/isc/bind/9.3.0/9.3.0-patch1)
Bye,
Mipam.
2005 Mar 16
1
working with pairlists imported from HDF5, converting to data frames?
I've used the HDF5 library to bring some data into R. THe verbose output
looks like this:
>
hdf5load("hdfGraphWed_Mar_16_13_33_37_2005.hdf",load=T,verbosity=1,tidy=T)
Processing object: cprSeats ...... which is a Group
Processing object: Seats 0 ...... its a dataset......Finished dataset
Processing object: Seats 1 ...... its a dataset......Finished dataset
Processing object:
1997 Aug 05
3
R-alpha: Version 0.50-a1 patches
A set of patches for R-0.50-a1 is now available as
ftp://stat.auckland.ac.nz/pub/R/R-0.50-a1.patch1.gz
The patches mainly fix problems reported since R-0.50-a1 but some
older problems are also fixed.
Here is the list of changes.
Ross
o Many subsetting and mutation problems with the new "expression" type
have now been fixed.
o When ask=T is set in par() the user is instructed
2010 Jan 03
21
Re: Xenified linux kernel
Known bug for 32-bit. Workaround is on the net.
http://mulps.wordpress.com/2009/05/29/compiling-xen-kernel-2-6-29-2/
Boris
________________________________
From: Mehdi Sheikhalishahi <mehdi.alishahi@gmail.com>
To: bderzhavets@yahoo.com
Sent: Sun, January 3, 2010 4:25:00 PM
Subject: Xenified linux kernel
Hi Dear:
I am refering to the
2009 Jul 07
1
Installation from source on Ubuntu 9.04, make kernel failure
Hi all,
I install Xen on a fresh Ubuntu 9.04 from source. During the code runing it shows usually "Warning: not literal format or no paramaters". By "make" linux kernel after 1 hours code running it ends with: (The installation steps is shown below)
---------------------------------------------------------------------------
WARNING: modpost: Found 1 section mismatch(es).
To
2003 Jul 08
0
Problem with package hdf5-1.4.7 in R-1.7.1
Hello:
Has anyone successfully installed the package hdf5-1.4.7 in R version
1.7.1? I get a fatal error with a core dump (see below) whenever I try
to use hdf5load.
Since I'm in the process of moving to a new machine, I'm not sure
whether this is due to (my installations of) the HDF5 libs or the hdf5
package for R. Just for the record, the HDF5 data files were correctly
generated in the
2009 Oct 31
13
[Bug 24830] New: Some characters are not drawn well, missing vertical lines with NVIDIA NV18
http://bugs.freedesktop.org/show_bug.cgi?id=24830
Summary: Some characters are not drawn well, missing vertical
lines with NVIDIA NV18
Product: xorg
Version: unspecified
Platform: x86 (IA32)
OS/Version: Linux (All)
Status: NEW
Severity: normal
Priority: medium
Component: Driver/nouveau
2009 Feb 06
2
[LLVMdev] list-td scheduler asserts on targets with implicitly defined registers
Hi,
I just switched to the 2.5 release branch and noticed that llc runs into the following assert in ScheduleDAGList::ScheduleNodeTopDown() using our custom backend:
assert(!I->isAssignedRegDep() &&
"The list-td scheduler doesn't yet support physreg dependencies!");
It turns out that the register dependency concerns the condition code register which is
2014 Mar 15
5
PATCH: OS SSE support detection, version 2
Erik de Castro Lopo wrote:
>> part 1: fixes
>>
>> part 2: new code
>>
>> Any comments?
>
> Applied cpu_part2.patch. Thanks!
Thanks. I hope that this code will help to avoid "bug" reports
such as http://sourceforge.net/p/flac/bugs/409/ (it seems that
the author of this report compiled FLAC without --enable-sse option).
OTOH, SSE support is
2018 May 10
0
[RFC] MC support for variant scheduling classes.
> On May 10, 2018, at 8:58 AM, Andrea Di Biagio <andrea.dibiagio at gmail.com> wrote:
>
> Hi all,
>
> The goal of this RFC is to make information related to variant scheduling
> classes accessible at MC level. This would help tools like llvm-mca
> understand/resolve variant scheduling classes.
>
> To achieve this goal, I plan to introduce a new class of