Hi Everyone, So I've been working a little with mzxml files generated from proteomics data. The current packages available to read these are not sufficient for what I am doing and I would like to build my own. The trouble I am having is how do I read in an mzxml file without the available packages (like reading in a table). I've been searching through Google for a couple of days and am getting a little frustrated. Thanks for the help, and sorry if such a simple question. Greg [[alternative HTML version deleted]]
A little googling gave me the result of package "caMassClass". Have you checked that. Best Regards, Bhupendrasinh Thakre Sent from my iPhone On Sep 21, 2012, at 2:02 PM, Greg Barding <gbard001 at ucr.edu> wrote:> Hi Everyone, > > So I've been working a little with mzxml files generated from proteomics > data. The current packages available to read these are not sufficient for > what I am doing and I would like to build my own. The trouble I am having > is how do I read in an mzxml file without the available packages (like > reading in a table). I've been searching through Google for a couple of > days and am getting a little frustrated. Thanks for the help, and sorry if > such a simple question. > > Greg > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.
Hello,
For questions like this,
install.packages('sos') # if not yet installed
library(sos) # load into R session
findFn('mzxml ')
The frist two look promising.
Hope this helps,
Rui Barradas
Em 21-09-2012 20:02, Greg Barding escreveu:> Hi Everyone,
>
> So I've been working a little with mzxml files generated from
proteomics
> data. The current packages available to read these are not sufficient for
> what I am doing and I would like to build my own. The trouble I am having
> is how do I read in an mzxml file without the available packages (like
> reading in a table). I've been searching through Google for a couple
of
> days and am getting a little frustrated. Thanks for the help, and sorry if
> such a simple question.
>
> Greg
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.