search for: camassclass

Hi, A new version of "caMassClass" package was released today. The package contain pipeline for processing and classification of protein mass spectra data. The main change is off-spinning from the library collection of generic functions into a new package "caTools". This package, which might be useful to broader grou...

Hi, A new version of "caMassClass" package was released today. The package contain pipeline for processing and classification of protein mass spectra data. The main change is off-spinning from the library collection of generic functions into a new package "caTools". This package, which might be useful to broader grou...

Hi, Lately my Latex engine used for checking packages stop working, and I can not figure out how to fix it. When creating my package (caMassClass) I get the * checking caMassClass-manual.tex ... ERROR LaTeX errors when creating DVI version. This typically indicates Rd problems. message. I look in caMassClass-manual.log file and find ! LaTeX Error: File `Rd.sty' not found. message. So I went to "R Installation and A...

Hi, I was wondering if anyone knows of a package that contains the ability for peak/valley detection. Here is an example of what I'm looking for, only problem is that it's written in Matlab. http://www.billauer.co.il/peakdet.html Thanks for any help in advance. -Joe

Hi, My package "caMassClass" depends on several other packages, one of them "PROcess" residing on "Bioconductor" website. Bioconductor repository is not, listed in default set of repositories in current version of R (Windows R 2.1.1). As a result people installing my package have to change that defaul...

I've been asked in private, (and am replying BCC to the asker), >> I saw your post on the R-help archives page about the possibility of >> porting a function from S-Plus called peaks() to R. I am looking for >> some way to locate peaks in a simple x,y data set, and thought that R >> might be the way to go. "of course" it is the way to go, don't get

...I understand it correctly but I created environmental variable TEXINPUTS with path to R_HOME/share/texm. It did not help. Any other suggestions? Should I use some other version of Latex? Do I have to configure it in any special way? Thanks for any suggestions, C:\programs\R\rw2001\src\library\caMassClass\man>R CMD Rd2dvi BaselineSubstracton.Rd Converting Rd files to LaTeX ... BaselineSubstraction.Rd Creating dvi output from LaTeX ... This is pdfTeX, Version 3.141592-1.20a-rc7.2 (MiKTeX 2.4) output format initialized to PDF (Rd2.tex LaTeX2e <2003/12/01> Babel <v3.8a> and hyphenation p...

...;RQuantLib","RMySQL", "RNetCDF","RODBC","ROracle","rsprng","RWinEdt","taskPR") #rejected because I subjectively think we don't need them failPackages2 <- c("aaMI","AlgDesign","bim","caMassClass","CGIwithR","CDNmoney","clac","clim.pact","compositions","cyclones","hapassoc","haplo.score","haplo.stats","hapsim","httpRequest", "labdsv","kza","LMGene"...

Hi Everyone, So I've been working a little with mzxml files generated from proteomics data. The current packages available to read these are not sufficient for what I am doing and I would like to build my own. The trouble I am having is how do I read in an mzxml file without the available packages (like reading in a table). I've been searching through Google for a couple of days and am

Hi, You should also check my msc.features.select from caMassClass package. It has feature selection algorithm that I found useful in case of mass-spectra data. It performs individual feature selection and/or removes highly correlated neighbor features. Jarek -----Original Message----- From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.mat...

CRAN et al., I would like to add an extented introduction or other arbitrary sections to my package lmomco. I have been shipping inst/doc/Introduction.Rd. I would like to have this content inserted to the front of the PDF build for the CRAN. The R-exts.pdf seems to be a little silent on this subject? For my purposes, I have been doing this R CMD Rd2dvi --pdf

...1 | R functions: GPL, Fortran code: ACM, free for noncommercial | 1 | S original available at statlib | 1 | The caMassClass Software License, Version 1.0 (See COPYING | 1 | The software may be distributed free of charge and used by | 3 | This package was written by Hans Peter Wolf. This software is...

...quot;,"boa","Bolstad","boolean","boost","boot","bootstrap","bqtl","BradleyTerry","brlr","BRugs","BSDA","BsMD","butler","calibrate","calibrator","caMassClass","car","cat","caTools","catspec","cba","cclust","CDNmoney","cfa","CGIwithR","changeLOS","chplot","chron","CircStats","circular","clac","cla...

Hello list! I would like to fit a distribution to each of the peaks in a histogram, such as this: http://photos1.blogger.com/blogger/7029/2724/1600/DU145-Bax3-Bcl-xL.png . The peaks are identified using Petr Pikal peaks function ( http://finzi.psych.upenn.edu/R/Rhelp02a/archive/33097.html), but after that I am quite stuck. Any idea as to how I can: Fit a distribution to each peak Integrate the

CRAN (and crantastic) updates this week New packages ------------ * Bergm (1.0) Alberto Caimo http://crantastic.org/packages/Bergm Functions implementing Bayesian estimation for exponential random graph models via exchange algorithm Updated packages ---------------- lmtest (0.9-26), logcondens (1.3.5), MTSKNN (0.0-4), pmml (1.2.21), r2lUniv (0.9.4), rattle (2.5.11), rgdal (0.6-23),