I am trying to input an OTU table into EstimateS, however, the format of the
OTU table has to be changed to fit the format EstimateS will accept. In R, I
would like to change the format of the OTU table (from excel). Here is what
I need to do, take Example 1 and create Example 2. The problem is that I
have hundreds of OTUs, so I can't do this by hand (and I'd love to have
a
code that I could use for different OTU tables).
Thanks!
Example 1 Example 2
Species Abundance Species
1 3 1
2 2 1
3 2 1
4 2 2
5 4 2
3
3
4
4
5
5
5
5
5
--
View this message in context:
http://r.789695.n4.nabble.com/R-code-help-to-change-table-format-tp4636022.html
Sent from the R help mailing list archive at Nabble.com.
Hello, You should say what is the package you are using, EstimateS returns hundreds of hits. [ package sos, findFn() ]. As for the question, try sp <- 1:5 ab <- c(3, 2, 2, 2, 4) rep(sp, ab) Hope this helps, Rui Barradas Em 10-07-2012 18:23, peziza escreveu:> I am trying to input an OTU table into EstimateS, however, the format of the > OTU table has to be changed to fit the format EstimateS will accept. In R, I > would like to change the format of the OTU table (from excel). Here is what > I need to do, take Example 1 and create Example 2. The problem is that I > have hundreds of OTUs, so I can't do this by hand (and I'd love to have a > code that I could use for different OTU tables). > Thanks! > > Example 1 Example 2 > Species Abundance Species > 1 3 1 > 2 2 1 > 3 2 1 > 4 2 2 > 5 4 2 > > 3 > > 3 > > 4 > > 4 > > 5 > 5 > > 5 > > 5 > > 5 > > > -- > View this message in context: http://r.789695.n4.nabble.com/R-code-help-to-change-table-format-tp4636022.html > Sent from the R help mailing list archive at Nabble.com. > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >