Greeting. Dear Mr/Mrs/Miss, I want to create a network by using R but I only have a table that contain OTU ID and the abundance value of two samples ONLY. Isn't possible? If can, which package can be used? Greatly appreciated to any suggestions and helps. Thank you. Best regards, Kang Chin Yi [[alternative HTML version deleted]]
I don?t know anything about network analysis, but I really guess that more information is needed to give an answer. Cheers, Rainer> On 14 Jul 2017, at 05:08, SEB140004 Student <chinyi at siswa.um.edu.my> wrote: > > Greeting. > > Dear Mr/Mrs/Miss, > > I want to create a network by using R but I only have a table that contain > OTU ID and the abundance value of two samples ONLY. > > Isn't possible? If can, which package can be used? > Greatly appreciated to any suggestions and helps. > > Thank you. > > Best regards, > Kang Chin Yi > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.
I don?t know anything about network analysis, but I really guess that more information is needed to give an answer. Cheers, Rainer> On 14 Jul 2017, at 05:08, SEB140004 Student <chinyi at siswa.um.edu.my> wrote: > > Greeting. > > Dear Mr/Mrs/Miss, > > I want to create a network by using R but I only have a table that contain > OTU ID and the abundance value of two samples ONLY. > > Isn't possible? If can, which package can be used? > Greatly appreciated to any suggestions and helps. > > Thank you. > > Best regards, > Kang Chin Yi > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.-- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) University of Z?rich Cell: +41 (0)78 630 66 57 Fax (D): +49 - (0)3 21 21 25 22 44 email: Rainer at krugs.de Skype: RMkrug -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 455 bytes Desc: Message signed with OpenPGP URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20170714/519cb35b/attachment.sig>
Have a look at the functions available in the igraph package. B.> On Jul 13, 2017, at 11:08 PM, SEB140004 Student <chinyi at siswa.um.edu.my> wrote: > > Greeting. > > Dear Mr/Mrs/Miss, > > I want to create a network by using R but I only have a table that contain > OTU ID and the abundance value of two samples ONLY. > > Isn't possible? If can, which package can be used? > Greatly appreciated to any suggestions and helps. > > Thank you. > > Best regards, > Kang Chin Yi > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.