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Josh B

2011-Feb-20 00:41 UTC

[R] Partial italic in graph titles when looping

Dear all,

I have a rather complicated problem. I am trying to loop through making graphs, 
so that the graph-making process is fully automated. For each graph, I'd
like to
make sure the corresponding title is formatted properly. The titles will be a 
combination of a gene name and numerical position within the gene. The gene name
should be italic-bold, whereas the gene position should be just bold.

Consider the following:

x <- read.table(textConnection("gene position
FLC 3312
TFL1 687
GA1 1127"), header = TRUE, as.is = TRUE)
closeAllConnections()

Now this, below, is essentially how I am automating the graph-making (imagine 
these graphs contain some sort of real data):

par(mfrow = c(3,1))
for (i in 1:nrow(x)){
    plot(z <- sort(rnorm(47)), type = "s", main = "")
    points(z, cex = .5, col = "dark red")
    title(main = paste(x[i,1], " p", x[i,2], sep = ""))
    }

The graphs produced by this method are almost perfect, except that the gene 
names are not italicized (they SHOULD be). 


So, once again, the big question is: how would I italicize the gene names but 
NOT the gene positions, when looping through to make these graphs and graph 
titles? If I WASN'T looping to make my graph titles, I could write:

title(main = expression(paste(bolditalic("FLC"),
bold("p3312"), sep = " ")))

...but I can't do that, because I'm looping (or can I?)

Thanks in advance for your help!

-----------------------------------
Josh Banta, Ph.D
Center for Genomics and Systems Biology
New York University
100 Washington Square East
New York, NY 10003
Tel: (212) 998-8465
http://plantevolutionaryecology.org


      
	[[alternative HTML version deleted]]

David Winsemius

2011-Feb-20 01:31 UTC

head link

[R] Partial italic in graph titles when looping

On Feb 19, 2011, at 7:41 PM, Josh B wrote:
> Dear all,
>
> I have a rather complicated problem. I am trying to loop through  
> making graphs,
> so that the graph-making process is fully automated. For each graph,  
> I'd like to
> make sure the corresponding title is formatted properly. The titles  
> will be a
> combination of a gene name and numerical position within the gene.  
> The gene name
> should be italic-bold, whereas the gene position should be just bold.
>
> Consider the following:
>
> x <- read.table(textConnection("gene position
> FLC 3312
> TFL1 687
> GA1 1127"), header = TRUE, as.is = TRUE)
> closeAllConnections()
>
> Now this, below, is essentially how I am automating the graph-making  
> (imagine
> these graphs contain some sort of real data):
>
> par(mfrow = c(3,1))
> for (i in 1:nrow(x)){
>    plot(z <- sort(rnorm(47)), type = "s", main = "")
>    points(z, cex = .5, col = "dark red")
>    title(main = paste(x[i,1], " p", x[i,2], sep = ""))
>    }
bquote is your friend (at least if one wants to use expressions rather  
than text):

for (i in 1:nrow(x)){
     plot(z <- sort(rnorm(47)), type = "s", main = "")
     points(z, cex = .5, col = "dark red")
     title(main = bquote(italic(.(x[i,1])*" p"*.(x[i,2]))))
     }

-- 
David.
>
> The graphs produced by this method are almost perfect, except that  
> the gene
> names are not italicized (they SHOULD be).
>
>
> So, once again, the big question is: how would I italicize the gene  
> names but
> NOT the gene positions, when looping through to make these graphs  
> and graph
> titles? If I WASN'T looping to make my graph titles, I could write:
>
> title(main = expression(paste(bolditalic("FLC"),
bold("p3312"), sep
> = " ")))
>
> ...but I can't do that, because I'm looping (or can I?)
>
> Thanks in advance for your help!
>
> -----------------------------------
> Josh Banta, Ph.D
> Center for Genomics and Systems Biology
> New York University
> 100 Washington Square East
> New York, NY 10003
> Tel: (212) 998-8465
> http://plantevolutionaryecology.org
>
>
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
David Winsemius, MD
West Hartford, CT

David Winsemius

2011-Feb-20 01:33 UTC

head link

[R] Partial italic in graph titles when looping

On Feb 19, 2011, at 7:41 PM, Josh B wrote:
> Dear all,
>
> I have a rather complicated problem. I am trying to loop through  
> making graphs,
> so that the graph-making process is fully automated. For each graph,  
> I'd like to
> make sure the corresponding title is formatted properly. The titles  
> will be a
> combination of a gene name and numerical position within the gene.  
> The gene name
> should be italic-bold, whereas the gene position should be just bold.
>
> Consider the following:
>
> x <- read.table(textConnection("gene position
> FLC 3312
> TFL1 687
> GA1 1127"), header = TRUE, as.is = TRUE)
> closeAllConnections()
>
> Now this, below, is essentially how I am automating the graph-making  
> (imagine
> these graphs contain some sort of real data):
>
> par(mfrow = c(3,1))
> for (i in 1:nrow(x)){
>    plot(z <- sort(rnorm(47)), type = "s", main = "")
>    points(z, cex = .5, col = "dark red")
>    title(main = paste(x[i,1], " p", x[i,2], sep = ""))
>    }
>Or perhaps (with a shuffling of the parens):
  for (i in 1:nrow(x)){
     plot(z <- sort(rnorm(47)), type = "s", main = "")
     points(z, cex = .5, col = "dark red")
     title(main = bquote(italic(.(x[i,1]))*" p"*.(x[i,2])))
     }
> The graphs produced by this method are almost perfect, except that  
> the gene
> names are not italicized (they SHOULD be).
>
>
> So, once again, the big question is: how would I italicize the gene  
> names but
> NOT the gene positions, when looping through to make these graphs  
> and graph
> titles? If I WASN'T looping to make my graph titles, I could write:
>
> title(main = expression(paste(bolditalic("FLC"),
bold("p3312"), sep
> = " ")))
>
> ...but I can't do that, because I'm looping (or can I?)
>
> Thanks in advance for your help!
>
> -----------------------------------
> Josh Banta, Ph.D
> Center for Genomics and Systems Biology
> New York University
> 100 Washington Square East
> New York, NY 10003
> Tel: (212) 998-8465
> http://plantevolutionaryecology.org
>
>
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
David Winsemius, MD
West Hartford, CT

Josh B

2011-Apr-11 16:28 UTC

head link

[R] Partial italic in graph titles when looping

Follow-up question:

I want to make the gene name bold and italic, AND make the "p" number
just bold.
But here's the catch: now I want the "p" number to appear as a
superscript!

For instance: TFL1^687 (the carrot is to indicate that I actually want the
"p"
number as a superscript).


Thanks very much in advance!

Sincerely,
Josh Banta




________________________________
From: David Winsemius <dwinsemius@comcast.net>

Sent: Sat, February 19, 2011 10:24:03 PM
Subject: Re: [R] Partial italic in graph titles when looping


On Feb 19, 2011, at 8:52 PM, Josh B wrote:
> Follow-up question: how would I make the gene name italic AND bold, and how
>would I make the " p" and the number just bold?
Could also work inside teh .() function

for (i in 1:nrow(x)){
   plot(z <- sort(rnorm(47)), type = "s", main = "")
   points(z, cex = .5, col = "dark red")
   title(main = bquote(italic(.(x[i,1]))*bold(" 
p")*bold(.(as.character(x[i,2])))))
   }> 
> From: David Winsemius <dwinsemius@comcast.net>
> Cc: R Help <r-help@r-project.org>
> Sent: Sat, February 19, 2011 8:33:33 PM
> Subject: Re: [R]Partial italic in graph titles when looping
> 
> 
> On Feb 19, 2011, at 7:41 PM, Josh B wrote:
> 
> > Dear all,
> >
> > I have a rather complicated problem. I am trying to loop through
making
>graphs,
> > so that the graph-making process is fully automated. For each graph,
I'd like
>to
> > make sure the corresponding title is formatted properly. The titles
will be
a> > combination of a gene name and numerical position within the gene. The
gene
>name
> > should be italic-bold, whereas the gene position should be just bold.
> >
> > Consider the following:
> >
> > x <- read.table(textConnection("gene position
> > FLC 3312
> > TFL1 687
> > GA1 1127"), header = TRUE, as.is = TRUE)
> > closeAllConnections()
> >
> > Now this, below, is essentially how I am automating the graph-making 
(imagine> > these graphs contain some sort of real data):
> >
> > par(mfrow = c(3,1))
> > for (i in 1:nrow(x)){
> >    plot(z <- sort(rnorm(47)), type = "s", main =
"")
> >    points(z, cex = .5, col = "dark red")
> >    title(main = paste(x[i,1], " p", x[i,2], sep =
""))
> >    }
> >
> Or perhaps (with a shuffling of the parens):
> for (i in 1:nrow(x)){
>     plot(z <- sort(rnorm(47)), type = "s", main =
"")
>     points(z, cex = .5, col = "dark red")
>     title(main = bquote(italic(.(x[i,1]))*" p"*.(x[i,2])))
>     }
> 
> > The graphs produced by this method are almost perfect, except that the
gene
> > names are not italicized (they SHOULD be).
> >
> >
> > So, once again, the big question is: how would I italicize the gene
names
but> > NOT the gene positions, when looping through to make these graphs and
graph
> > titles? If I WASN'T looping to make my graph titles, I could
write:
> >
> > title(main = expression(paste(bolditalic("FLC"),
bold("p3312"), sep = " ")))
> >
> > ...but I can't do that, because I'm looping (or can I?)
> >
[[elided Yahoo spam]]> >
> > -----------------------------------
> > Josh Banta, Ph.D
> > Center for Genomics and Systems Biology
> > New York University
> > 100 Washington Square East
> > New York, NY 10003
> > Tel: (212) 998-8465
> > http://plantevolutionaryecology.org
> >
> >
> >
> >     [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> 
> David Winsemius, MD
> West Hartford, CT
> 
> 
> 
David Winsemius, MD
West Hartford, CT
	[[alternative HTML version deleted]]

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