Hello, I have basic familiarity with Unix but by most standards a novice. I am trying to install R on a linux machine and am following the instructions in the R install and admin guide in terms of what is required to compile the R source code. I downloaded R version 2.11.1 and extracted the files into my home directory. I realize I need a FORTRAN compiler to help with this process and have tried installing a few but still cannot past the configuration step of installing R: ./configure --with-readline=no Once I run this command after installing GFortran I get the following error: ... checking whether we can compute C Make dependencies... yes, using gcc -std=gnu99 -MM checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes checking how to get verbose linking output from gfortran... configure: WARNING: compilation failed checking for Fortran 77 libraries of gfortran... checking how to get verbose linking output from gcc -std=gnu99... -v checking for C libraries of gcc -std=gnu99... -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... configure: error: in `/home/lotayv01/R-2.11.1': configure: error: cannot compile a simple Fortran program See `config.log' for more details. For more details I can show you the section in the config.log file ... /data/home/lotayv01/usr/local/gfortran/bin/../libexec/gcc/i686-pc-linux-gnu/4.6.0/f951: error while loading shared libraries: libmpc.so.2: cannot open shared object file: No such file or directory configure:22471: $? = 1 configure: failed program was: | program main | | end configure:22548: WARNING: compilation failed configure:22554: result: configure:22556: checking for Fortran 77 libraries of gfortran configure:22579: gfortran -o conftest -L/usr/local/lib64 conftest.f /data/home/lotayv01/usr/local/gfortran/bin/../libexec/gcc/i686-pc-linux-gnu/4.6.0/f951: error while loading shared libraries: libmpc.so.2: cannot open shared object file: No such file or directory ... When I check the version of Gfortran at the console command line I get this: GNU Fortran (GCC) 4.6.0 20100407 (experimental) [trunk revision 158083] Copyright (C) 2010 Free Software Foundation, Inc. Even before this I tried the g95 fortran compiler and the same thing happened, how can I fix this problem, any help on this matter would be greatly appreciated. Thanks -- View this message in context: http://r.789695.n4.nabble.com/R-linux-install-FORTRAN-compiling-error-tp2240821p2240821.html Sent from the R help mailing list archive at Nabble.com.
This is not an issue with R, but with gfortran. See the following: http://gcc.gnu.org/wiki/GFortran#news (under heading "gfortran 4.5") http://gcc.gnu.org/ml/fortran/2010-04/msg00061.html Also, I suspect you are using a precompiled gcc/gfortran, and it assumes you have libmpc.so.2 <http://www.muliprecision.org> installed. If you compile all of gcc, you won't see this problem. However, this is probably not the simplest solution. I'd try the solution in the second link above. Else, if `gcc --version` <= 4.4, get the compiled gfortran at that version. P.S. `grep -R mpc.h R-2.11.1/*` indicates R does not depend on libmpc Matt Shotwell Graduate Student Division of Biostatistics and Epidemiology Medical University of South Carolina On Wed, 2010-06-02 at 17:07 -0400, vaneet wrote:> Hello, > > I have basic familiarity with Unix but by most standards a novice. I am > trying to install R on a linux machine and am following the instructions in > the R install and admin guide in terms of what is required to compile the R > source code. I downloaded R version 2.11.1 and extracted the files into my > home directory. I realize I need a FORTRAN compiler to help with this > process and have tried installing a few but still cannot past the > configuration step of installing R: > > ./configure --with-readline=no > > Once I run this command after installing GFortran I get the following error: > ... > checking whether we can compute C Make dependencies... yes, using gcc > -std=gnu99 -MM > checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes > checking how to get verbose linking output from gfortran... configure: > WARNING: compilation failed > > checking for Fortran 77 libraries of gfortran... > checking how to get verbose linking output from gcc -std=gnu99... -v > checking for C libraries of gcc -std=gnu99... -L/usr/local/lib64 > -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 > -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 -L/lib/../lib64 > -L/usr/lib/../lib64 -lgcc_s > checking for dummy main to link with Fortran 77 libraries... none > checking for Fortran 77 name-mangling scheme... configure: error: in > `/home/lotayv01/R-2.11.1': > configure: error: cannot compile a simple Fortran program > See `config.log' for more details. > > For more details I can show you the section in the config.log file > > ... > /data/home/lotayv01/usr/local/gfortran/bin/../libexec/gcc/i686-pc-linux-gnu/4.6.0/f951: > error while loading shared libraries: libmpc.so.2: cannot open shared object > file: No such file or directory > configure:22471: $? = 1 > configure: failed program was: > | program main > | > | end > configure:22548: WARNING: compilation failed > configure:22554: result: > configure:22556: checking for Fortran 77 libraries of gfortran > configure:22579: gfortran -o conftest -L/usr/local/lib64 conftest.f > /data/home/lotayv01/usr/local/gfortran/bin/../libexec/gcc/i686-pc-linux-gnu/4.6.0/f951: > error while loading shared libraries: libmpc.so.2: cannot open shared object > file: No such file or directory > ... > > When I check the version of Gfortran at the console command line I get this: > GNU Fortran (GCC) 4.6.0 20100407 (experimental) [trunk revision 158083] > Copyright (C) 2010 Free Software Foundation, Inc. > > Even before this I tried the g95 fortran compiler and the same thing > happened, how can I fix this problem, any help on this matter would be > greatly appreciated. > > Thanks
P.S. My linux machine has the following info: Red Hat Enterprise Linux Server release 5.5 (Tikanga) -- View this message in context: http://r.789695.n4.nabble.com/R-linux-install-FORTRAN-compiling-error-tp2240821p2241770.html Sent from the R help mailing list archive at Nabble.com.
On Jun 3, 2010, at 9:17 AM, vaneet wrote:> > Thanks for your replies. > > I understand you think the best solution is to find the gfortran and > possibly libgfortran packages from the version of my Linux and gcc > distribution which according to a quick check is the following (also this is > a 64 bit linux machine): > > gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) > Copyright (C) 2006 Free Software Foundation, Inc. > This is free software; see the source for copying conditions. There is NO > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > > The question is do you know where I can find a free gfortran package from > this distribution and would I need to completely reinstall the gcc package > from that version that includes gfortran and other compilers or can I simply > add gfortran to my existing packages? > > ThanksSorry that I am coming to this late, but is there a reason that you did not install R using already available RPMs other than perhaps not being aware that they exist? For RHEL 4 and 5 there is the EPEL: https://fedoraproject.org/wiki/EPEL which provides pre-built binaries of many add-on packages, including R. R 2.11.0 is available there and Tom Callaway posted on the Fedora SIG list this morning that 2.11.1 is in the updates testing repo. If you do need a FORTRAN compiler, which you may yet for add-on CRAN packages, one should be available via the regular RHEL repos, for which you would have already paid for access (not to mention direct telephone support from RH). For RHEL 5 (based upon your followup), follow the instructions here: https://fedoraproject.org/wiki/EPEL/FAQ#howtouse to gain access to the EPEL. Then, as root, you can use: yum install R-core R-devel to install R. By staying with RPMs specifically built for your release, you tend to obviate version incompatibility issues, as Prof. Ripley has noted. HTH, Marc Schwartz
Seemingly Similar Threads
- [LLVMdev] gfortran link failure in current llvm svn
- [LLVMdev] gfortran link failure in current llvm svn
- [LLVMdev] gfortran link failure in current llvm svn
- [LLVMdev] gfortran link failure in current llvm svn
- [LLVMdev] gfortran link failure in current llvm svn