Hi,
Thanks for the reply!
I am not sure if I did correctly. Now I configure with the following.
./configure --prefix=/usr/local/R/R-2.9.2 --with-gnu-ld --with-cairo --with-x
--enable-R-fPIC
Make and make install with no errors. However when I install rpy2, it states
that "R was not built as a library"
[root@plap03 rpy2-2.1.1]# python setup.py install
running install
running build
running build_py
running build_ext
R was not built as a library
Traceback (most recent call last):
File "setup.py", line 302, in <module>
[os.path.join(''doc'', ''source'',
''rpy2_logo.png'')])]
File "/usr/local/python2.6/lib/python2.6/distutils/core.py", line
152, in setup
dist.run_commands()
File "/usr/local/python2.6/lib/python2.6/distutils/dist.py", line
975, in run_commands
self.run_command(cmd)
File "/usr/local/python2.6/lib/python2.6/distutils/dist.py", line
995, in run_command
cmd_obj.run()
File
"/usr/local/python2.6/lib/python2.6/distutils/command/install.py",
line 577, in run
self.run_command(''build'')
File "/usr/local/python2.6/lib/python2.6/distutils/cmd.py", line
333, in run_command
self.distribution.run_command(command)
File "/usr/local/python2.6/lib/python2.6/distutils/dist.py", line
995, in run_command
cmd_obj.run()
File
"/usr/local/python2.6/lib/python2.6/distutils/command/build.py", line
134, in run
self.run_command(cmd_name)
File "/usr/local/python2.6/lib/python2.6/distutils/cmd.py", line
333, in run_command
self.distribution.run_command(command)
File "/usr/local/python2.6/lib/python2.6/distutils/dist.py", line
994, in run_command
cmd_obj.ensure_finalized()
File "/usr/local/python2.6/lib/python2.6/distutils/cmd.py", line
117, in ensure_finalized
self.finalize_options()
File "setup.py", line 121, in finalize_options
include_dirs = get_rconfig(r_home,
''--cppflags'')[0].split()
File "setup.py", line 196, in get_rconfig
raise Exception(cmd + ''\nreturned\n'' + rconfig)
Exception: "/usr/local/R/R-2.9.2/lib64/R/bin/R" CMD config --cppflags
returned
Thanks again :)
Regards,
Padma
On 5/13/10 11:30 PM, "Uwe Ligges"
<ligges@statistik.tu-dortmund.de> wrote:
On 13.05.2010 11:45, Padma TAN wrote:> Hi,
>
> I am trying to compile R with the command below in order to install rpy2.
>
> ./configure --prefix=/usr/local/R/R-2.9.2 --with-gnu-ld --with-cairo
> --with-x --enable-R-shlib
>
>
> However, error the I have gotten was:
> /usr/bin/ld: CConverters.o: relocation R_X86_64_32S against
`R_FunTab'' can
> not be used when making a shared object; recompile with -fPIC
> CConverters.o: could not read symbols: Bad value
> collect2: ld returned 1 exit status
> make[3]: *** [libR.so] Error 1
>
> I don''t really understand the error message. Is there anything I
can change
> to compile properly so that I can install rpy2?
>
> Please help. Thanks in advance! :)
>
>
> Regards,
> Padma
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
Note the last sentence above and try again, i.e. use a recent version of
R and report the version number as well as the OS and the compilers in use.
Best,
Uwe Ligges
[[alternative HTML version deleted]]