lu_zero at gentoo.org
2006-Jun-12 13:41 UTC
[Rd] Link error with glibc-2.4 on linux/PPC (PR#8967)
Full_Name: Luca Barbato Version: 2.3.1 OS: Gentoo Linux/PPC Submission from: (NULL) (151.44.163.144) system informations Portage 2.1 (default-linux/ppc/ppc32/2006.0/G4, gcc-4.1.1, glibc-2.4-r3, 2.6.17-rc5 ppc) ================================================================System uname: 2.6.17-rc5 ppc 7447A, altivec supported Gentoo Base System version 1.12.1 distcc 2.18.3 powerpc-unknown-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] dev-lang/python: 2.4.3-r1 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: [Not Present] dev-util/confcache: 0.4.2-r1 sys-apps/sandbox: 1.2.18.1 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2 sys-devel/binutils: 2.16.1-r2 sys-devel/gcc-config: 1.3.13-r2 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.11-r4 ACCEPT_KEYWORDS="ppc ~ppc" AUTOCLEAN="yes" CBUILD="powerpc-unknown-linux-gnu" CFLAGS="-O2 -mcpu=G4 -mtune=G4 -fno-strict-aliasing -pipe -maltivec -mabi=altivec" CHOST="powerpc-unknown-linux-gnu" Fault log gfortran -fpic -g -O2 -c xxxpr.f -o xxxpr.o powerpc-unknown-linux-gnu-gcc -shared -o libR.so Rembedded.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o `ls ../appl/*.o ../nmath/*.o ../unix/*.o 2>/dev/null` -lgfortran -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -ldl -lm /usr/lib/gcc/powerpc-unknown-linux-gnu/4.1.1/../../../crti.o: In function `call_gmon_start': /var/tmp/portage/glibc-2.4-r3/work/build-default-powerpc-unknown-linux-gnu-nptl/csu/crti.S:18: relocation truncated to fit: R_PPC_GOT16 against undefined symbol `__gmon_start__' CConverters.o: In function `do_setToCConverterActiveStatus': CConverters.c:(.text+0x522): relocation truncated to fit: R_PPC_GOT16 against symbol `R_NaInt' defined in .sbss section in main.o CConverters.c:(.text+0x556): relocation truncated to fit: R_PPC_GOT16 against symbol `R_FunTab' defined in .data.rel section in names.o CConverters.o: In function `R_converterMatchClass': CConverters.c:(.text+0x71a): relocation truncated to fit: R_PPC_GOT16 against symbol `R_ClassSymbol' defined in .sbss section in main.o CConverters.c:(.text+0x7f2): relocation truncated to fit: R_PPC_GOT16 against symbol `R_NilValue' defined in .sbss section in main.o CommandLineArgs.o: In function `R_common_command_line': CommandLineArgs.c:(.text+0x5e): relocation truncated to fit: R_PPC_GOT16 against symbol `R_RestoreHistory' defined in .sbss section in main.o CommandLineArgs.c:(.text+0x722): relocation truncated to fit: R_PPC_GOT16 against symbol `R_StdinEnc' defined in .data section in main.o Rdynload.o: In function `GetFullDLLPath': Rdynload.c:(.text+0x6a): relocation truncated to fit: R_PPC_GOT16 against symbol `R_osDynSymbol' defined in .sdata section in Rdynload.o Rdynload.o: In function `Rf_MakeDLLInfo': Rdynload.c:(.text+0x1c2): relocation truncated to fit: R_PPC_GOT16 against symbol `R_ClassSymbol' defined in .sbss section in main.o Rdynload.c:(.text+0x1e6): relocation truncated to fit: R_PPC_GOT16 against symbol `R_NilValue' defined in .sbss section in main.o Rdynload.c:(.text+0x3a2): additional relocation overflows omitted from the output collect2: ld returned 1 exit status
ripley at stats.ox.ac.uk
2006-Jun-12 15:52 UTC
[Rd] Link error with glibc-2.4 on linux/PPC (PR#8967)
Does this system need -fPIC?
R cannot be expected to know the settings needed in config.site for all
possible systems, and as you will see from the notes in configure.ac,
ppc32 does not appear to need -fPIC according to the gcc documentation.
Indeed, the manual INSTALL asked you to read says:
Variables such as @env{CPICFLAGS} are determined where possible by
@command{configure}. Some systems allows two types of PIC flags, for
example @samp{-fpic} and @samp{-fPIC}, and if they differ the first
allows only a limited number of symbols in a shared library. Since @R{}
as a shared library has about 6200 symbols, if in doubt use the larger
version.
and an issue discussed in the installation manual is hardly a bug.
On Mon, 12 Jun 2006, lu_zero at gentoo.org wrote:
> Full_Name: Luca Barbato
> Version: 2.3.1
> OS: Gentoo Linux/PPC
> Submission from: (NULL) (151.44.163.144)
>
>
> system informations
>
> Portage 2.1 (default-linux/ppc/ppc32/2006.0/G4, gcc-4.1.1, glibc-2.4-r3,
> 2.6.17-rc5 ppc)
> ================================================================> System
uname: 2.6.17-rc5 ppc 7447A, altivec supported
> Gentoo Base System version 1.12.1
> distcc 2.18.3 powerpc-unknown-linux-gnu (protocols 1 and 2) (default port
3632)
> [disabled]
> dev-lang/python: 2.4.3-r1
> dev-python/pycrypto: 2.0.1-r5
> dev-util/ccache: [Not Present]
> dev-util/confcache: 0.4.2-r1
> sys-apps/sandbox: 1.2.18.1
> sys-devel/autoconf: 2.13, 2.59-r7
> sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2
> sys-devel/binutils: 2.16.1-r2
> sys-devel/gcc-config: 1.3.13-r2
> sys-devel/libtool: 1.5.22
> virtual/os-headers: 2.6.11-r4
> ACCEPT_KEYWORDS="ppc ~ppc"
> AUTOCLEAN="yes"
> CBUILD="powerpc-unknown-linux-gnu"
> CFLAGS="-O2 -mcpu=G4 -mtune=G4 -fno-strict-aliasing -pipe -maltivec
> -mabi=altivec"
> CHOST="powerpc-unknown-linux-gnu"
>
> Fault log
>
> gfortran -fpic -g -O2 -c xxxpr.f -o xxxpr.o
> powerpc-unknown-linux-gnu-gcc -shared -o libR.so Rembedded.o
CConverters.o
> CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o
> array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o
complex.o
> connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o
deriv.o
> dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o
> format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o
internet.o
> iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o
> memory.o model.o names.o objects.o optim.o optimize.o options.o par.o
paste.o
> pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o
printvector.o
> printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o
> saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o
sprintf.o
> startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o
util.o
> version.o vfonts.o xxxpr.o `ls ../appl/*.o ../nmath/*.o ../unix/*.o
> 2>/dev/null` -lgfortran -lm -lgcc_s ../extra/zlib/libz.a
> ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -ldl -lm
> /usr/lib/gcc/powerpc-unknown-linux-gnu/4.1.1/../../../crti.o: In function
> `call_gmon_start':
>
/var/tmp/portage/glibc-2.4-r3/work/build-default-powerpc-unknown-linux-gnu-nptl/csu/crti.S:18:
> relocation truncated to fit: R_PPC_GOT16 against undefined symbol
> `__gmon_start__'
> CConverters.o: In function `do_setToCConverterActiveStatus':
> CConverters.c:(.text+0x522): relocation truncated to fit: R_PPC_GOT16
against
> symbol `R_NaInt' defined in .sbss section in main.o
> CConverters.c:(.text+0x556): relocation truncated to fit: R_PPC_GOT16
against
> symbol `R_FunTab' defined in .data.rel section in names.o
> CConverters.o: In function `R_converterMatchClass':
> CConverters.c:(.text+0x71a): relocation truncated to fit: R_PPC_GOT16
against
> symbol `R_ClassSymbol' defined in .sbss section in main.o
> CConverters.c:(.text+0x7f2): relocation truncated to fit: R_PPC_GOT16
against
> symbol `R_NilValue' defined in .sbss section in main.o
> CommandLineArgs.o: In function `R_common_command_line':
> CommandLineArgs.c:(.text+0x5e): relocation truncated to fit: R_PPC_GOT16
against
> symbol `R_RestoreHistory' defined in .sbss section in main.o
> CommandLineArgs.c:(.text+0x722): relocation truncated to fit: R_PPC_GOT16
> against symbol `R_StdinEnc' defined in .data section in main.o
> Rdynload.o: In function `GetFullDLLPath':
> Rdynload.c:(.text+0x6a): relocation truncated to fit: R_PPC_GOT16 against
symbol
> `R_osDynSymbol' defined in .sdata section in Rdynload.o
> Rdynload.o: In function `Rf_MakeDLLInfo':
> Rdynload.c:(.text+0x1c2): relocation truncated to fit: R_PPC_GOT16 against
> symbol `R_ClassSymbol' defined in .sbss section in main.o
> Rdynload.c:(.text+0x1e6): relocation truncated to fit: R_PPC_GOT16 against
> symbol `R_NilValue' defined in .sbss section in main.o
> Rdynload.c:(.text+0x3a2): additional relocation overflows omitted from the
> output
> collect2: ld returned 1 exit status
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>
--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595