similar to: Compiling R with --enable-R-shlib for rpy2 error

Hi, I've been trying to get a shared library version of the R package(version 2.12.1) installed on a CentOS 5 system. (It installs fine without but other packages demand shared libs - namely Rapache). I've tried this with yum but don't know of any flags to set to tell it to installl with shared libs enabled. I then tried a local R install as non-root with source packages: after

Full_Name: Luca Barbato Version: 2.3.1 OS: Gentoo Linux/PPC Submission from: (NULL) (151.44.163.144) system informations Portage 2.1 (default-linux/ppc/ppc32/2006.0/G4, gcc-4.1.1, glibc-2.4-r3, 2.6.17-rc5 ppc) ================================================================= System uname: 2.6.17-rc5 ppc 7447A, altivec supported Gentoo Base System version 1.12.1 distcc 2.18.3

I need to install rpy2 on RHEL6. The version of R in the 6 repos is 3.0, and rpy2 does not work with that version. I installed R 3.3.3 following the directions here: https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with 3.3.3 it's still failing. Using pip it fails with: /usr/local/lib64/R/lib/libR.a(CommandLineArgs.o): could not read symbols: Bad value and installing from

Hello, I have a problem with package "python-rpy2" with Debian Wheezy repository. I use this repo : deb http://cran.r-project.org/bin/linux/debian wheezy-cran3/ This package depends on "python-singledispatch" but it doesn't exist in official Debian repo... Could you help me to fix this issue ? Thanks a lot,

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Hi - I am having trouble installing rpy2. I have already compiled R as a shared library, but I do not have admin privileges on so I am trying to install rpy2 with: pip install -user rpy2 but I am getting the following error: ======================================== ./rpy/rinterface/_rinterface.c:86:31: fatal error: readline/readline.h: No such file or directory compilation terminated. error:

> On Jul 20, 2017, at 7:53 AM, Larry Martell <larry.martell at gmail.com> wrote: > > I need to install rpy2 on RHEL6. The version of R in the 6 repos is > 3.0, and rpy2 does not work with that version. I installed R 3.3.3 > following the directions here: > https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with > 3.3.3 it's still failing. Using pip it

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

Hi This is my function. It serves an HTML page after the calculations. I'm connecting to a MSSQL DB using pyodbc. def CAPM(self,client): r=self.r cds="1590" bm="20559" d1 = [] v1 = [] v2 = [] print"Parsing GET Params" params=client.g[1].split("&") for items in

Hi, Have installed Ubuntu packages for R by adding: deb http:///bin/linux/ubuntu hardy/ to my /etc/apt/sources.list file and using: sudo apt-get update sudo apt-get install r-base I understand that to enable shlib I need to download source files to my home directory. When I run apt-get source r-base I get the message: You must put some 'source' URIs in your sources.list Fair enough!

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

The code has been taken from specifically ac_python_devel.m4 published at <http://ac-archive.sf.net/>, it has turned out to be less error-prone on my Debian system. --- configure.ac | 46 ++++++++++++---------------------------------- 1 files changed, 12 insertions(+), 34 deletions(-) diff --git a/configure.ac b/configure.ac index b82a841..5805ddd 100644 --- a/configure.ac +++

Hi again. I'm putting together a little project with R, python, and a website. So I have an HTML file, a py file, an R file. Here is the HTML file: <form action="/cgi-bin/radio4.py" method="post" target="_blank"> <input type="radio" name="subject" value="Integrate" /> Integrate <input type="radio"

Hi I am using oprofile 0.9.3 on xen cs 16540 on an Intel system. When I look at the top "hot" functions, I see p2m_change_type being one of the top function in xen-syms. This function is only in the svm (AMD) code and should not appear on an Intel system. I see that this function is not being clled at all when I am running my apps as I have put printk in the functions and they do

Hi all, I am new to python, R and rpy2. I having few errors when I am using 'fisher.test' function where I am struck now. Please help to fix these bugs. My code for fisher.test goes this way *from rpy2 import * import rpy2.robjects as robjects def fisherExact(a,b,c,d): v = [a,b,c,d] m = robjects.r['matrix'](v,2,2) s = robjects.r['fisher.test'](m) return s *

Hi, I have buit Xen (32 bit) with PAE and can start multiple Paraguests with 4 gig memory, but cannot launch a single VM with more than 4 gb memory. I would like to launch 1 VM with 30GB or so memory. Are there any config paramters like kernel,/inittrd that need to be changed. I have the ramdisk set to the initrd I used to boot xen with PAE. Thanks - padma

I have pulled the latest from xen-unstable on a new machine, I run make world and make install and after rebooting into xen, when i run xm list or anything else i get: # xm list Traceback (most recent call last): File "/usr/sbin/xm", line 5, in <module> from xen.xm import main ImportError: No module named xen.xm I also tried going into the tools dir and make install,

I have pulled the latest from xen-unstable on a new machine, I run make world and make install and after rebooting into xen, when i run xm list or anything else i get: # xm list Traceback (most recent call last): File "/usr/sbin/xm", line 5, in <module> from xen.xm import main ImportError: No module named xen.xm I also tried going into the tools dir and make install,

Hi, I just added 32GB memory in my system and wanted Xen to see that memory, so enabled PAE in xen0 and XenU. I did a make menuconfig in xen0 and xenU, then did a make in xen-unstable and a make install. Whilebooting this kernel, I get the above error PAE mode mismatch. I looked under xen/include/asm-x86/processor.h has #define X86_CR4_PAE defined and so does cpufeature.h have this defined.