Dear all,
I'm using Roxygen for the first time and I'm getting a rather cryptic
error message. I must be doing something wrong but I have no clue what
is it. Any suggestions?
Regards,
Thierry
roxygenize("AFLP", roxygen.dir = "AFLP", copy.package =
FALSE,
unlink.target = FALSE)
Writing AFLP.outlier to AFLP/man/AFLP.outlier.Rd
Writing AFLP.outlier to AFLP/man/AFLP.outlier.Rd
Error in col(m) :
a matrix-like object is required as argument to 'row/col'
traceback()
14: col(m)
13: split.default(m, col(m))
12: split(m, col(m))
11: zip(c, ...)
10: zip.c(names(formals), formals)
9: parse.formals(partitum)
8: parse.usage(partitum)
7: function (partitum)
{
assign.parent("params", NULL, environment())
assign.parent("examples", NULL, environment())
parse.name(partitum)
parse.usage(partitum)
}(list(assignee = "AFLP.outlier", formals = list(Replicate
"data.frame(PC = character(), Replicate = character(), Observed
numeric())",
Specimen = "data.frame(PC = character(), Specimen = character(),
Observed = numeric())",
Marker = "data.frame(PC = character(), Marker = numeric(),
Observed = numeric())",
Residual = c("data.frame(PC = character(), Replicate character(),
Marker = numeric(), ",
" Observed = numeric())")), srcref = list(filename
"AFLP/R/AFLP-outlier.R",
lloc = c(26L, 1L, 31L, 1L, 1L, 1L))))
6: do.call(proc, list(...))
5: maybe.call(pre.parse, partitum)
4: roclet$parse.parsed(parse.files(...))
3: function (...)
roclet$parse.parsed(parse.files(...))("AFLP/R/AFLP-outlier.R",
"AFLP/R/AFLP-package.R", "AFLP/R/as-AFLP.R",
"AFLP/R/is-AFLP.R")
2: do.call(Rd$parse, files)
1: roxygenize("AFLP", roxygen.dir = "AFLP", copy.package =
FALSE,
unlink.target = FALSE)
#content of AFLP-outlier.R
#' Holds the outliers of an AFLP project
#' @method AFLP outlier
#' @param Replicate a dataframe with the name of the primer combination
(PC),
#' the name of the replicate and the observed value of the
outlier
#' @param Specimen a dataframe with the name of the primer combination
(PC),
#' the name of the specimen and the observed value of the
outlier
#' @param Marker a dataframe with the name of the primer combination
(PC),
#' the name of the marker and the observed value of the
outlier
#' @param Residual a dataframe with the name of the primer combination
(PC),
#' the name of the replicate, the name of the marker and
the observed value
#' of the outlier
#' @return An object of the AFLP.outlier class
#' @author Thierry Onkelinx \email{Thierry.Onkelinx@@inbo.be}
#' @examples
#' AFLP.outlier()
setClass("AFLP.outlier",
representation = representation(Replicate = "data.frame",
Specimen = "data.frame",
Marker = "data.frame", Residual = "data.frame"),
prototype = prototype(Replicate = data.frame(PC = character(),
Replicate = character(), Observed = numeric()),
Specimen = data.frame(PC = character(), Specimen character(), Observed =
numeric()),
Marker = data.frame(PC = character(), Marker numeric(), Observed = numeric()),
Residual = data.frame(PC = character(), Replicate character(), Marker =
numeric(), Observed = numeric()))
)
AFLP.outlier <- function(Replicate = data.frame(PC = character(),
Replicate = character(), Observed = numeric()),
Specimen = data.frame(PC = character(), Specimen character(), Observed =
numeric()),
Marker = data.frame(PC = character(), Marker numeric(), Observed = numeric()),
Residual = data.frame(PC = character(), Replicate character(), Marker =
numeric(), Observed = numeric())){
new("AFLP.outlier", Replicate = Replicate, Specimen = Specimen,
Marker = Marker, Residual = Residual)
}
------------------------------------------------------------------------
----
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature
and Forest
Cel biometrie, methodologie en kwaliteitszorg / Section biometrics,
methodology and quality assurance
Gaverstraat 4
9500 Geraardsbergen
Belgium
tel. + 32 54/436 185
Thierry.Onkelinx at inbo.be
www.inbo.be
To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to
say what the experiment died of.
~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data.
~ Roger Brinner
The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of
data.
~ John Tukey
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door een geldig ondertekend document. The views expressed in this message
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