similar to: Cryptic error with Roxygen

Dear all, I get a bug in the examples of my AFLP package on R-forge (https://r-forge.r-project.org/R/?group_id=1027) but only on the Linux version. The windows version compiles. The Mac version skips the examples and compiles. The strange thing is that the packages compiles on my Ubuntu 10.10 machine with R 2.15.0. Therefore I can't reproduce the error. I have traced the problem at

Dear all, I'm writing a package and I would like to reuse the residuals() function. When I use a function which calls the redefined residuals (for my custom class) I get an error (see below). It looks like the wrong method is used. The strange this is, that when it execute the code manually it get no error. Any suggestions? Best regards, Thierry The entire source code is at

Is this the appropriate place for GSoC conversations? If I understand the proposal correctly, there should be a lexer (written in R) that exposes an API; that API would be used by segregated mini-parsers (Roclets) which do the dirty work of Roxygen -> {html, LaTeX, DocBook, ...} translation. The lexer should ship with a proof-of-concept Roclet. Have I missed anything?

While checking packages against R 2.13.0-beta on Windows, I have run into a few strange error messages related to copying files. The errors all relate to file.copy() and have the form of: Error in Sys.chmod(to[okay], file.info(from[okay])$mode, TRUE) : 'mode' must be of length at least one After half a day of tinkering, the best reproducible example I can come up with involves using

Dear all, I'm not getting what I'm doing wrong. The line below from my read.fsa.bin function throws an error when just loading my AFLP package and disappears when I load the zoo package as well. #the line that throws the error Index <- which(Peak == rollmax(Peak, k = 1 + 2 * floor((min(diff(SizeStandard)) * Fs - 1) / 2), fill = -Inf)) #the error Error in UseMethod("rollmax")

Dear List, I ran into the following two problems while using the package 'roxygen': QUESTION 1 I split the relevant R-Code for my package into the following scripts: classes.R (S4), functions.R ('standard' functions), generics.R (S4), methods.R (S4). Function package.skeleton() generates Rd-files for all class defs, function defs etc. in dir 'pkg/man'. So far, so good.

I am trying to make a package consisting of a single function with auto-documentation assistance from 'roxygen' but am uncertain of the correct procedure. My version of 'R' is 2.10.1. I followed the following steps: 1) Get an existing function (un-commented) as an '.R' file. 2) Add formal comments (e.g. owner) above that function's code using the [#' @] syntax.

Dear list, somehow I can't get the Roxygen tag "@example" to work for me. My "Roxygen-Header" of a script containing, say, a function looks like this: #' My header #' #' My description #' #' @param a Blabla. #' @param b Blabla. #' @return \code{TRUE}. #' @callGraphPrimitives #' @references #'

Hello useRs, I'm trying to use the Roxygen package. Here my code file : #' A packge to check Roxygen's sanity #' @name helloRoxygen-package #' @docType package NA And my R code to generate the package : library(roxygen) package.skeleton("helloRoxygen", code_files = "roxy.r", force = T) roxygenize("helloRoxygen", "helloRoxygen",

I'm trying to use Roxygen for the first time, but I'm running into trouble. I call it like so: roxygenize('~/p4/r-packages/IREval', '~/p4/r-packages/IREval', unlink.target=T) But it seems that it's only appending to files in ~/p4/r-packages/IREval/man/, not overwriting them. So for example, for a function that I haven't documented yet I get a long

> -----Urspr?ngliche Nachricht----- > Von: roxygen-devel-bounces at lists.r-forge.r-project.org [mailto:roxygen- > devel-bounces at lists.r-forge.r-project.org] Im Auftrag von Vinh Nguyen > Gesendet: Donnerstag, 4. November 2010 04:04 > An: roxygen-devel at r-forge.wu-wien.ac.at > Betreff: Re: [Roxygen-devel] Roxygen: @example tag does not work for me > > Try @examples

Hi all, It seems roxygen will create Rd files for any functions under the ./R/ directory, and I did not find a way to hide certain functions, even if I specified a name space. E.g. #' @export f = function() {} #' do nothing g = function() {} If I run roxygenize() on the package, both f and g will be documented, although only f is visible to the users. Thanks! Regards, Yihui -- Yihui

Hi, A new package Rd2roxygen has been released on CRAN: http://cran.r-project.org/package=Rd2roxygen (source package available; binaries to come) This package can be useful for developers who used to document their functions in the raw Rd files but want to switch to roxygen now using inline roxygen comments (e.g. me). The main functionality of this package is to parse the Rd files under the

On 04/10/2015 7:34 PM, Ben Bolker wrote: > Duncan Murdoch <murdoch.duncan <at> gmail.com> writes: > >> >> On 04/10/2015 10:10 AM, Jonathan Greenberg wrote: >>> Folks: >>> > > [snip snip snip] > >>> >>> Is there a way to do a conditional importFrom based on the OS? Or can I >>> safely ignore this (I'm trying

I have Vista Home with R-2.9.0, and installed and tried to test the package 'roxygen': > utils:::menuInstallPkgs() trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/windows/contrib/2.9/roxygen_0.1.zip' Content type 'application/zip' length 699474 bytes (683 Kb) opened URL downloaded 683 Kb package 'roxygen' successfully unpacked and MD5 sums checked The

Hi is there a list of all roxygen tags which are available? I couldn't find them. I am asking specifically towards the use of roxygen in documenting S4 classes - is that implemented yet (i am using roxygen 0.1 from CRAN at the moment)? Thanks Rainer -- Rainer M. Krug, Centre of Excellence for Invasion Biology, Stellenbosch University, South Africa

Dear list, I have just started to use roxygen and cannot find out how to specify NOT RUN examples. I know that to include R code examples works via the @examples tag followed by the code. Without roxygen, if I want R code not to be run when processing the .Rd files I would include the \dontrun tag \examples{\dontrun{ ... some example R code} } How can I achieve this using roxygen? Thanks Mark

Any way to tell Roxygen to ignore a block of code? It is generating an unwanted .Rd file. I've been searching for hours for an example, scouring documentation, but no luck... Thanks. - Ken -- View this message in context: http://www.nabble.com/Roxygen-to-ignore-a-block-of-code--tp24133293p24133293.html Sent from the R help mailing list archive at Nabble.com.

Hi all, Since roxygen is a great help to document R packages, I am wondering if there exists an approach to go back from the raw Rd files to roxygen-documentation? E.g. turn "\author{Somebody}" into "@author Somebody". This sounds ridiculous, but I believe it helps in the long term for me to maintain R packages. Thanks! Regards, Yihui -- Yihui Xie <xieyihui at

I am modifying a package that appears to have been made with roxygen. I'm currently running Debian stable (wheezy) amd64 with the stock R 2.15.1. I have some other, mostly older, flavors as well. roxygen doesn't seem to be in the Debian repositories or (if I wanted to switch to R v3) http://cran.r-project.org/bin/linux/debian/wheezy-cran3/. Any tips? Just install from source and