Fedora 9
R 2.7.1
I tried to install R on my Linux system using
install.packages("Rcmdr", dependencies=TRUE).
I received many, many, many error messages. I hope someone can suggest a
fix.
The output from warnings()
is listed below. A more detailed list of errors from one of the failed
installations is listed below the warnings:
> warnings()
Warning messages:
1: In install.packages("Rcmdr", dependencies = TRUE) ... :
dependency ?Biobase? is not available
2: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'maps' had non-zero exit status
3: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'kinship' had non-zero exit status
4: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'ape' had non-zero exit status
5: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'gee' had non-zero exit status
6: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'tkrplot' had non-zero exit status
7: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'kernlab' had non-zero exit status
8: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'akima' had non-zero exit status
9: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'Hmisc' had non-zero exit status
10: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'colorspace' had non-zero exit status
11: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'randomForest' had non-zero exit status
12: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'Matrix' had non-zero exit status
13: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'chron' had non-zero exit status
14: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'e1071' had non-zero exit status
15: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'mlbench' had non-zero exit status
16: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'mvtnorm' had non-zero exit status
17: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'robustbase' had non-zero exit status
18: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'rgl' had non-zero exit status
19: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'RODBC' had non-zero exit status
20: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'mapproj' had non-zero exit status
21: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'Design' had non-zero exit status
22: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'plm' had non-zero exit status
23: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'vcd' had non-zero exit status
24: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'its' had non-zero exit status
25: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'tseries' had non-zero exit status
26: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'ipred' had non-zero exit status
27: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'lme4' had non-zero exit status
28: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'coin' had non-zero exit status
29: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'multcomp' had non-zero exit status
30: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'systemfit' had non-zero exit status
31: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of p32: In install.packages("Rcmdr", dependencies =
TRUE) ... :
installation of package 'fSeries' had non-zero exit status
33: In install.packages("Rcmdr", dependencies = TRUE) ... :
installation of package 'mboost' had non-zero exit status
More detailed error messages:
* Installing *source* package 'party' ...
** libs
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Classes.c -o Classes.o
In file included from Classes.c:9:
party.h:6:15: error: R.h: No such file or directory
party.h:7:19: error: Rmath.h: No such file or directory
party.h:8:24: error: Rinternals.h: No such file or directory
party.h:9:22: error: Rdefines.h: No such file or directory
party.h:10:42: error: R_ext/Applic.h: No such file or directory
party.h:11:43: error: R_ext/Lapack.h: No such file or directory
In file included from party.h:15,
from Classes.c:9:
Classes.h:3: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?PL2_expectationSym?
Classes.h:67: error: expected ?)? before ?object?
Classes.h:68: error: expected ?)? before ?object?
Classes.h:69: error: expected ?)? before ?object?
Classes.h:70: error: expected ?)? before ?object?
Classes.h:71: error: expected ?)? before ?object?
Classes.h:72: error: expected ?)? before ?object?
Classes.h:73: error: expected ?)? before ?object?
Classes.h:74: error: expected ?)? before ?object?
Classes.h:75: error: expected ?)? before ?object?
Classes.h:76: error: expected ?)? before ?object?
Classes.h:77: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_transformation?
Classes.h:78: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_test_trafo?
Classes.h:79: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_predict_trafo?
Classes.h:80: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_variable?
Classes.h:81: error: expected ?)? before ?object?
Classes.h:82: error: expected ?)? before ?object?
Classes.h:83: error: expected ?)? before ?object?
Classes.h:84: error: expected ?)? before ?object?
Classes.h:85: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_missings?
Classes.h:86: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_ordering?
Classes.h:87: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_levels?
Classes.h:88: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_scores?
Classes.h:89: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_whichNA?
Classes.h:90: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_varmemory?
Classes.h:91: error: expected ?)? before ?object?
Classes.h:92: error: expected ?)? before ?object?
Classes.h:93: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_weights?
Classes.h:94: error: expected ?)? before ?object?
Classes.h:95: error: expected ?)? before ?object?
Classes.h:96: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_varctrl?
Classes.h:97: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_splitctrl?
Classes.h:98: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_gtctrl?
Classes.h:99: error: expected ?)? before ?object?
Classes.h:100: error: expected ?)? before ?object?
Classes.h:101: error: expected ?)? before ?object?
Classes.h:102: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_dontuse?
Classes.h:103: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_dontusetmp?
Classes.h:104: error: expected ?)? before ?object?
Classes.h:105: error: expected ?)? before ?object?
Classes.h:106: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_tgctrl?
Classes.h:107: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_splitstatistics?
Classes.h:108: error: expected ?)? before ?object?
Classes.h:109: error: expected ?)? before ?object?
Classes.h:110: error: expected ?)? before ?object?
Classes.h:111: error: expected ?)? before ?object?
Classes.h:112: error: expected ?)? before ?object?
In file included from party.h:16,
from Classes.c:9:
Utils.h:5: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?La_svd?
Utils.h:8: error: expected ?)? before ?x?
Utils.h:15: error: expected ?)? before ?x?
Utils.h:16: error: expected ?)? before ?y?
Utils.h:19: error: expected declaration specifiers or ?...? before ?SEXP?
Utils.h:21: error: expected ?)? before ?subtree?
Utils.h:22: error: expected declaration specifiers or ?...? before ?SEXP?
Utils.h:22: error: expected declaration specifiers or ?...? before ?SEXP?
Utils.h:22: error: expected declaration specifiers or ?...? before ?SEXP?
In file included from party.h:17,
from Classes.c:9:
mvt.h:5: error: ?F77_NAME? declared as function returning a function
mvt.h:5: warning: parameter names (without types) in function
declaration
In file included from party.h:18,
from Classes.c:9:
LinearStatistic.h:8: error: expected declaration specifiers or ?...?
before ?SEXP?
LinearStatistic.h:12: warning: type defaults to ?int? in declaration of
?SEXP?
LinearStatistic.h:12: error: expected ?;?, ?,? or ?)? before ?expcovinf?
LinearStatistic.h:18: error: expected ?=?, ?,?, ?;?, ?asm? or
?__attribute__? before ?R_ExpectCovarInfluence?
In file included from party.h:20,
from Classes.c:9:
Distributions.h:5: error: expected declaration specifiers or ?...?
before ?SEXP?
Distributions.h:5: error: expected declaration specifiers or ?...?
before ?SEXP?
Distributions.h:6: error: expected declaration specifiers or ?...?
before ?SEXP?
Distributions.h:6: error: expected declaration specifiers or ?...?
before ?SEXP?
Distributions.h:6: error: expected declaration specifiers or ?...?
before ?SEXP?
In file included from party.h:21,
from Classes.c:9:
Convenience.h:5: error: expected declaration specifiers or ?...? before
?SEXP?
Convenience.h:5: error: expected declaration specifiers or ?...? before
?SEXP?
Convenience.h:6: error: expected ?)? before ?linexpcov?
Convenience.h:7: error: expected ?)? before ?linexpcov?
Convenience.h:8: warning: type defaults to ?int? in declaration of ?SEXP?
Convenience.h:8: error: expected ?;?, ?,? or ?)? before ?linexpcov?
Convenience.h:9: error: expected declaration specifiers or ?...? before
?SEXP?
In file included from party.h:22,
from Classes.c:9:
S3Classes.h:2: error: expected ?)? before ?node?
S3Classes.h:3: error: expected ?)? before ?node?
S3Classes.h:4: error: expected ?)? before ?node?
S3Classes.h:5: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_nodeweights?
S3Classes.h:6: error: expected ?)? before ?node?
S3Classes.h:7: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_teststat?
S3Classes.h:8: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_criterion?
S3Classes.h:9: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_maxcriterion?
S3Classes.h:10: error: expected ?)? before ?node?
S3Classes.h:11: error: expected ?)? before ?node?
S3Classes.h:12: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_primarysplit?
S3Classes.h:13: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_surrogatesplits?
S3Classes.h:14: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_prediction?
S3Classes.h:15: error: expected ?)? before ?split?
S3Classes.h:16: error: expected ?)? before ?split?
S3Classes.h:17: error: expected ?)? before ?split?
S3Classes.h:18: error: expected ?)? before ?split?
S3Classes.h:19: error: expected ?)? before ?split?
S3Classes.h:20: error: expected ?)? before ?split?
S3Classes.h:21: error: expected ?)? before ?split?
S3Classes.h:22: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_splitpoint?
S3Classes.h:23: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_splitstatistics?
S3Classes.h:24: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_leftnode?
S3Classes.h:25: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_rightnode?
S3Classes.h:26: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?S3get_table?
S3Classes.h:27: error: expected ?)? before ?split?
S3Classes.h:28: error: expected ?)? before ?split?
In file included from party.h:23,
from Classes.c:9:
IndependenceTest.h:2: error: expected ?)? before ?learnsample?
IndependenceTest.h:4: warning: type defaults to ?int? in declaration of
?SEXP?
IndependenceTest.h:4: error: expected ?;?, ?,? or ?)? before ?linexpcov?
IndependenceTest.h:6: warning: type defaults to ?int? in declaration of
?SEXP?
IndependenceTest.h:6: error: expected ?;?, ?,? or ?)? before ?linexpcov?
In file included from party.h:24,
from Classes.c:9:
Splits.h:5: error: expected declaration specifiers or ?...? before ?SEXP?
Splits.h:5: error: expected declaration specifiers or ?...? before ?SEXP?
Splits.h:6: error: expected declaration specifiers or ?...? before ?SEXP?
Splits.h:13: error: expected declaration specifiers or ?...? before
?SEXP?
Splits.h:13: error: expected declaration specifiers or ?...? before
?SEXP?
Splits.h:14: error: expected declaration specifiers or ?...? before
?SEXP?
In file included from party.h:25,
from Classes.c:9:
Node.h:2: error: expected ?)? before ?node?
In file included from party.h:26,
from Classes.c:9:
Predict.h:2: error: expected ?)? before ?node?
In file included from party.h:27,
from Classes.c:9:
SurrogateSplits.h:2: error: expected ?)? before ?node?
SurrogateSplits.h:3: error: expected ?)? before ?node?
In file included from party.h:28,
from Classes.c:9:
TreeGrow.h:2: error: expected ?)? before ?node?
Classes.c:12: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?PL2_expectationSym?
Classes.c:77: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?party_init?
Classes.c:147: error: expected ?)? before ?object?
Classes.c:151: error: expected ?)? before ?object?
Classes.c:155: error: expected ?)? before ?object?
Classes.c:159: error: expected ?)? before ?object?
Classes.c:163: error: expected ?)? before ?object?
Classes.c:167: error: expected ?)? before ?object?
Classes.c:171: error: expected ?)? before ?object?
Classes.c:175: error: expected ?)? before ?object?
Classes.c:179: error: expected ?)? before ?object?
Classes.c:183: error: expected ?)? before ?object?
Classes.c:187: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_transformation?
Classes.c:193: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_test_trafo?
Classes.c:197: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_predict_trafo?
Classes.c:202: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_variable?
Classes.c:208: error: expected ?)? before ?object?
Classes.c:212: error: expected ?)? before ?object?
Classes.c:216: error: expected ?)? before ?object?
Classes.c:220: error: expected ?)? before ?object?
Classes.c:224: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_ordering?
Classes.c:235: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_levels?
Classes.c:247: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_scores?
Classes.c:258: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_missings?
Classes.c:269: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_varmemory?
Classes.c:274: error: expected ?)? before ?object?
Classes.c:278: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_splitstatistics?
Classes.c:282: error: expected ?)? before ?object?
Classes.c:286: error: expected ?)? before ?object?
Classes.c:290: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_weights?
Classes.c:294: error: expected ?)? before ?object?
Classes.c:298: error: expected ?)? before ?object?
Classes.c:302: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_varctrl?
Classes.c:306: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_splitctrl?
Classes.c:310: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_gtctrl?
Classes.c:314: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_tgctrl?
Classes.c:318: error: expected ?)? before ?object?
Classes.c:322: error: expected ?)? before ?object?
Classes.c:326: error: expected ?)? before ?object?
Classes.c:330: error: expected ?)? before ?object?
Classes.c:334: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_dontuse?
Classes.c:338: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__?
before ?get_dontusetmp?
Classes.c:342: error: expected ?)? before ?object?
Classes.c:346: error: expected ?)? before ?object?
Classes.c:354: error: expected ?)? before ?object?
Classes.c:358: error: expected ?)? before ?object?
Classes.c:362: error: expected ?)? before ?object?
make: *** [Classes.o] Error 1
ERROR: compilation failed for package 'party'
** Removing '/usr/lib/R/library/party'
John Sorkin M.D., Ph.D.
Chief, Biostatistics and Informatics
Baltimore VA Medical Center GRECC,
University of Maryland School of Medicine Claude D. Pepper OAIC,
University of Maryland Clinical Nutrition Research Unit, and
Baltimore VA Center Stroke of Excellence
University of Maryland School of Medicine
Division of Gerontology
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
jsorkin at grecc.umaryland.edu
Confidentiality Statement:
This email message, including any attachments, is for th...{{dropped:6}}
On Fri, Aug 15, 2008 at 6:15 PM, John Sorkin <jsorkin at grecc.umaryland.edu> wrote:> Fedora 9 > R 2.7.1 > > I tried to install R on my Linux system using > install.packages("Rcmdr", dependencies=TRUE). > > I received many, many, many error messages. I hope someone can suggest a > fix. > > The output from warnings() > is listed below. A more detailed list of errors from one of the failed > installations is listed below the warnings:Have you R-devel rpm installed? Paul
John Sorkin wrote:> Fedora 9 > R 2.7.1 > > I tried to install R on my Linux system using > install.packages("Rcmdr", dependencies=TRUE). > > I received many, many, many error messages. I hope someone can suggest a > fix. >Looks like you forgot to install the R-devel package. (And yes, the error messages are rather, er, indirect, but Fedora's packaging is not our decision... The giveaway is the absence of R.h and friends.)> The output from warnings() > is listed below. A more detailed list of errors from one of the failed > installations is listed below the warnings: > > >> warnings() >> > Warning messages: > 1: In install.packages("Rcmdr", dependencies = TRUE) ... : > dependency ?Biobase? is not available > 2: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'maps' had non-zero exit status > 3: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'kinship' had non-zero exit status > 4: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'ape' had non-zero exit status > 5: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'gee' had non-zero exit status > 6: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'tkrplot' had non-zero exit status > 7: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'kernlab' had non-zero exit status > 8: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'akima' had non-zero exit status > 9: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'Hmisc' had non-zero exit status > 10: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'colorspace' had non-zero exit status > 11: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'randomForest' had non-zero exit status > 12: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'Matrix' had non-zero exit status > 13: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'chron' had non-zero exit status > 14: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'e1071' had non-zero exit status > 15: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'mlbench' had non-zero exit status > 16: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'mvtnorm' had non-zero exit status > 17: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'robustbase' had non-zero exit status > 18: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'rgl' had non-zero exit status > 19: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'RODBC' had non-zero exit status > 20: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'mapproj' had non-zero exit status > 21: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'Design' had non-zero exit status > 22: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'plm' had non-zero exit status > 23: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'vcd' had non-zero exit status > 24: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'its' had non-zero exit status > 25: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'tseries' had non-zero exit status > 26: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'ipred' had non-zero exit status > 27: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'lme4' had non-zero exit status > 28: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'coin' had non-zero exit status > 29: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'multcomp' had non-zero exit status > 30: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'systemfit' had non-zero exit status > 31: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of p32: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'fSeries' had non-zero exit status > 33: In install.packages("Rcmdr", dependencies = TRUE) ... : > installation of package 'mboost' had non-zero exit status > > > More detailed error messages: > * Installing *source* package 'party' ... > ** libs > gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2 > -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector > --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic > -fasynchronous-unwind-tables -c Classes.c -o Classes.o > In file included from Classes.c:9: > party.h:6:15: error: R.h: No such file or directory > party.h:7:19: error: Rmath.h: No such file or directory > party.h:8:24: error: Rinternals.h: No such file or directory > party.h:9:22: error: Rdefines.h: No such file or directory > party.h:10:42: error: R_ext/Applic.h: No such file or directory > party.h:11:43: error: R_ext/Lapack.h: No such file or directory > In file included from party.h:15, > from Classes.c:9: > Classes.h:3: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?PL2_expectationSym? > Classes.h:67: error: expected ?)? before ?object? > Classes.h:68: error: expected ?)? before ?object? > Classes.h:69: error: expected ?)? before ?object? > Classes.h:70: error: expected ?)? before ?object? > Classes.h:71: error: expected ?)? before ?object? > Classes.h:72: error: expected ?)? before ?object? > Classes.h:73: error: expected ?)? before ?object? > Classes.h:74: error: expected ?)? before ?object? > Classes.h:75: error: expected ?)? before ?object? > Classes.h:76: error: expected ?)? before ?object? > Classes.h:77: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_transformation? > Classes.h:78: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_test_trafo? > Classes.h:79: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_predict_trafo? > Classes.h:80: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_variable? > Classes.h:81: error: expected ?)? before ?object? > Classes.h:82: error: expected ?)? before ?object? > Classes.h:83: error: expected ?)? before ?object? > Classes.h:84: error: expected ?)? before ?object? > Classes.h:85: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_missings? > Classes.h:86: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_ordering? > Classes.h:87: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_levels? > Classes.h:88: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_scores? > Classes.h:89: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_whichNA? > Classes.h:90: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_varmemory? > Classes.h:91: error: expected ?)? before ?object? > Classes.h:92: error: expected ?)? before ?object? > Classes.h:93: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_weights? > Classes.h:94: error: expected ?)? before ?object? > Classes.h:95: error: expected ?)? before ?object? > Classes.h:96: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_varctrl? > Classes.h:97: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_splitctrl? > Classes.h:98: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_gtctrl? > Classes.h:99: error: expected ?)? before ?object? > Classes.h:100: error: expected ?)? before ?object? > Classes.h:101: error: expected ?)? before ?object? > Classes.h:102: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_dontuse? > Classes.h:103: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_dontusetmp? > Classes.h:104: error: expected ?)? before ?object? > Classes.h:105: error: expected ?)? before ?object? > Classes.h:106: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_tgctrl? > Classes.h:107: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_splitstatistics? > Classes.h:108: error: expected ?)? before ?object? > Classes.h:109: error: expected ?)? before ?object? > Classes.h:110: error: expected ?)? before ?object? > Classes.h:111: error: expected ?)? before ?object? > Classes.h:112: error: expected ?)? before ?object? > In file included from party.h:16, > from Classes.c:9: > Utils.h:5: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?La_svd? > Utils.h:8: error: expected ?)? before ?x? > Utils.h:15: error: expected ?)? before ?x? > Utils.h:16: error: expected ?)? before ?y? > Utils.h:19: error: expected declaration specifiers or ?...? before ?SEXP? > Utils.h:21: error: expected ?)? before ?subtree? > Utils.h:22: error: expected declaration specifiers or ?...? before ?SEXP? > Utils.h:22: error: expected declaration specifiers or ?...? before ?SEXP? > Utils.h:22: error: expected declaration specifiers or ?...? before ?SEXP? > In file included from party.h:17, > from Classes.c:9: > mvt.h:5: error: ?F77_NAME? declared as function returning a function > mvt.h:5: warning: parameter names (without types) in function > declaration > In file included from party.h:18, > from Classes.c:9: > LinearStatistic.h:8: error: expected declaration specifiers or ?...? > before ?SEXP? > LinearStatistic.h:12: warning: type defaults to ?int? in declaration of > ?SEXP? > LinearStatistic.h:12: error: expected ?;?, ?,? or ?)? before ?expcovinf? > LinearStatistic.h:18: error: expected ?=?, ?,?, ?;?, ?asm? or > ?__attribute__? before ?R_ExpectCovarInfluence? > In file included from party.h:20, > from Classes.c:9: > Distributions.h:5: error: expected declaration specifiers or ?...? > before ?SEXP? > Distributions.h:5: error: expected declaration specifiers or ?...? > before ?SEXP? > Distributions.h:6: error: expected declaration specifiers or ?...? > before ?SEXP? > Distributions.h:6: error: expected declaration specifiers or ?...? > before ?SEXP? > Distributions.h:6: error: expected declaration specifiers or ?...? > before ?SEXP? > In file included from party.h:21, > from Classes.c:9: > Convenience.h:5: error: expected declaration specifiers or ?...? before > ?SEXP? > Convenience.h:5: error: expected declaration specifiers or ?...? before > ?SEXP? > Convenience.h:6: error: expected ?)? before ?linexpcov? > Convenience.h:7: error: expected ?)? before ?linexpcov? > Convenience.h:8: warning: type defaults to ?int? in declaration of ?SEXP? > Convenience.h:8: error: expected ?;?, ?,? or ?)? before ?linexpcov? > Convenience.h:9: error: expected declaration specifiers or ?...? before > ?SEXP? > In file included from party.h:22, > from Classes.c:9: > S3Classes.h:2: error: expected ?)? before ?node? > S3Classes.h:3: error: expected ?)? before ?node? > S3Classes.h:4: error: expected ?)? before ?node? > S3Classes.h:5: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_nodeweights? > S3Classes.h:6: error: expected ?)? before ?node? > S3Classes.h:7: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_teststat? > S3Classes.h:8: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_criterion? > S3Classes.h:9: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_maxcriterion? > S3Classes.h:10: error: expected ?)? before ?node? > S3Classes.h:11: error: expected ?)? before ?node? > S3Classes.h:12: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_primarysplit? > S3Classes.h:13: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_surrogatesplits? > S3Classes.h:14: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_prediction? > S3Classes.h:15: error: expected ?)? before ?split? > S3Classes.h:16: error: expected ?)? before ?split? > S3Classes.h:17: error: expected ?)? before ?split? > S3Classes.h:18: error: expected ?)? before ?split? > S3Classes.h:19: error: expected ?)? before ?split? > S3Classes.h:20: error: expected ?)? before ?split? > S3Classes.h:21: error: expected ?)? before ?split? > S3Classes.h:22: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_splitpoint? > S3Classes.h:23: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_splitstatistics? > S3Classes.h:24: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_leftnode? > S3Classes.h:25: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_rightnode? > S3Classes.h:26: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?S3get_table? > S3Classes.h:27: error: expected ?)? before ?split? > S3Classes.h:28: error: expected ?)? before ?split? > In file included from party.h:23, > from Classes.c:9: > IndependenceTest.h:2: error: expected ?)? before ?learnsample? > IndependenceTest.h:4: warning: type defaults to ?int? in declaration of > ?SEXP? > IndependenceTest.h:4: error: expected ?;?, ?,? or ?)? before ?linexpcov? > IndependenceTest.h:6: warning: type defaults to ?int? in declaration of > ?SEXP? > IndependenceTest.h:6: error: expected ?;?, ?,? or ?)? before ?linexpcov? > In file included from party.h:24, > from Classes.c:9: > Splits.h:5: error: expected declaration specifiers or ?...? before ?SEXP? > Splits.h:5: error: expected declaration specifiers or ?...? before ?SEXP? > Splits.h:6: error: expected declaration specifiers or ?...? before ?SEXP? > Splits.h:13: error: expected declaration specifiers or ?...? before > ?SEXP? > Splits.h:13: error: expected declaration specifiers or ?...? before > ?SEXP? > Splits.h:14: error: expected declaration specifiers or ?...? before > ?SEXP? > In file included from party.h:25, > from Classes.c:9: > Node.h:2: error: expected ?)? before ?node? > In file included from party.h:26, > from Classes.c:9: > Predict.h:2: error: expected ?)? before ?node? > In file included from party.h:27, > from Classes.c:9: > SurrogateSplits.h:2: error: expected ?)? before ?node? > SurrogateSplits.h:3: error: expected ?)? before ?node? > In file included from party.h:28, > from Classes.c:9: > TreeGrow.h:2: error: expected ?)? before ?node? > Classes.c:12: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?PL2_expectationSym? > Classes.c:77: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?party_init? > Classes.c:147: error: expected ?)? before ?object? > Classes.c:151: error: expected ?)? before ?object? > Classes.c:155: error: expected ?)? before ?object? > Classes.c:159: error: expected ?)? before ?object? > Classes.c:163: error: expected ?)? before ?object? > Classes.c:167: error: expected ?)? before ?object? > Classes.c:171: error: expected ?)? before ?object? > Classes.c:175: error: expected ?)? before ?object? > Classes.c:179: error: expected ?)? before ?object? > Classes.c:183: error: expected ?)? before ?object? > Classes.c:187: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_transformation? > Classes.c:193: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_test_trafo? > Classes.c:197: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_predict_trafo? > Classes.c:202: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_variable? > Classes.c:208: error: expected ?)? before ?object? > Classes.c:212: error: expected ?)? before ?object? > Classes.c:216: error: expected ?)? before ?object? > Classes.c:220: error: expected ?)? before ?object? > Classes.c:224: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_ordering? > Classes.c:235: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_levels? > Classes.c:247: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_scores? > Classes.c:258: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_missings? > Classes.c:269: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_varmemory? > Classes.c:274: error: expected ?)? before ?object? > Classes.c:278: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_splitstatistics? > Classes.c:282: error: expected ?)? before ?object? > Classes.c:286: error: expected ?)? before ?object? > Classes.c:290: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_weights? > Classes.c:294: error: expected ?)? before ?object? > Classes.c:298: error: expected ?)? before ?object? > Classes.c:302: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_varctrl? > Classes.c:306: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_splitctrl? > Classes.c:310: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_gtctrl? > Classes.c:314: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_tgctrl? > Classes.c:318: error: expected ?)? before ?object? > Classes.c:322: error: expected ?)? before ?object? > Classes.c:326: error: expected ?)? before ?object? > Classes.c:330: error: expected ?)? before ?object? > Classes.c:334: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_dontuse? > Classes.c:338: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? > before ?get_dontusetmp? > Classes.c:342: error: expected ?)? before ?object? > Classes.c:346: error: expected ?)? before ?object? > Classes.c:354: error: expected ?)? before ?object? > Classes.c:358: error: expected ?)? before ?object? > Classes.c:362: error: expected ?)? before ?object? > make: *** [Classes.o] Error 1 > ERROR: compilation failed for package 'party' > ** Removing '/usr/lib/R/library/party' > > > John Sorkin M.D., Ph.D. > Chief, Biostatistics and Informatics > Baltimore VA Medical Center GRECC, > University of Maryland School of Medicine Claude D. Pepper OAIC, > University of Maryland Clinical Nutrition Research Unit, and > Baltimore VA Center Stroke of Excellence > > University of Maryland School of Medicine > Division of Gerontology > Baltimore VA Medical Center > 10 North Greene Street > GRECC (BT/18/GR) > Baltimore, MD 21201-1524 > > (Phone) 410-605-7119 > (Fax) 410-605-7913 (Please call phone number above prior to faxing) > jsorkin at grecc.umaryland.edu > Confidentiality Statement: > This email message, including any attachments, is for ...{{dropped:16}}
Paul,
I installed R-devel as root, and then re-tried to install R-cmdr as a
regular users. Unfortunately I still receive multiple error messages.
Any suggestions? I have pasted on set of error messages below:
* DONE (multcomp)
* Installing *source* package 'party' ...
** libs
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Classes.c -o Classes.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Convenience.c -o Convenience.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Distributions.c -o Distributions.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c IndependenceTest.c -o IndependenceTest.o
IndependenceTest.c: In function ?C_GlobalTest?:
IndependenceTest.c:138: warning: unused variable ?ithiswhichNA?
IndependenceTest.c:136: warning: unused variable ?thiswhichNA?
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c LinearStatistic.c -o LinearStatistic.o
gfortran -m32 -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32
-march=i386 -mtune=generic -fasynchronous-unwind-tables
-I/usr/lib/gfortran/modules -c mvt.f -o mvt.o
mvt.f:5.72:
& MAXPTS, ABSEPS, RELEPS, ERROR, VALUE, INFORM )
1
Warning: Line truncated at (1)
mvt.f:84.33:
SUBROUTINE MVSUBR( N, W, NF, F )
1
Warning: Unused dummy argument 'nf' at (1)
mvt.f:179.72:
IF ( INFI(1) .NE. 0 ) VL = VL - MVSTDT( NU, A(1)-DL(1) )
1
Warning: Line truncated at (1)
mvt.f:194.72:
SUBROUTINE MVVLSB( N,W,R,DL,INFI, A,B,COV, Y, DI,EI, ND, VALUE )
1
Warning: Line truncated at (1)
mvt.f:362.72:
IF ( INFI(I) .NE. 0 ) Y(I) = MVTDNS( 0, AMIN )
1
Warning: Line truncated at (1)
mvt.f:363.72:
IF ( INFI(I) .NE. 1 ) Y(I) = Y(I) - MVTDNS( 0, BMIN )
1
Warning: Line truncated at (1)
mvt.f:817.72:
IF ( R .LT. 0 ) BVN = -BVN + MAX( ZERO, MVPHI(-H) - MVPHI(-K) )
1
Warning: Line truncated at (1)
mvt.f:858.72:
DOUBLE PRECISION FUNCTION MVBVT( NU, LOWER, UPPER, INFIN, CORREL )
1
Warning: Line truncated at (1)
mvt.f:1029.72:
bvt = atan2(-snu*(hkn*qhrk+hpk*hkrn),hkn*hkrn-nu*hpk*qhrk)/tpi
1
Warning: Line truncated at (1)
mvt.f:1284.72:
FINEST(K) = FINEST(K) + ( FINVAL(K) - FINEST(K) )/( 1+VARPRD )
1
Warning: Line truncated at (1)
mvt.f:1476.72:
VALUES(J) = VALUES(J) + ( FS(J) - VALUES(J) )/( 2*K-1 ) Warning:
Line truncated at (1)
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Node.c -o Node.o
Node.c: In function ?C_Node?:
Node.c:57: warning: unused variable ?dweights?
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Predict.c -o Predict.o
Predict.c: In function ?C_get_node?:
Predict.c:124: warning: unused variable ?dweights?
Predict.c:123: warning: unused variable ?weights?
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c RandomForest.c -o RandomForest.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c S3Classes.c -o S3Classes.o
S3Classes.c: In function ?S3get_sumweights?:
S3Classes.c:61: warning: value computed is not used
S3Classes.c:62: warning: control reaches end of non-void function
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Splits.c -o Splits.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c SurrogateSplits.c -o SurrogateSplits.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c TestStatistic.c -o TestStatistic.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c TreeGrow.c -o TreeGrow.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Utils.c -o Utils.o
Utils.c: In function ?C_MPinv?:
Utils.c:187: warning: unused variable ?svdx?
gcc -m32 -std=gnu99 -shared -L/usr/local/lib -o party.so Classes.o
Convenience.o Distributions.o IndependenceTest.o LinearStatistic.o mvt.o
Node.o Predict.o RandomForest.o S3Classes.o Splits.o SurrogateSplits.o
TestStatistic.o TreeGrow.o Utils.o -L/usr/lib/R/lib -lRlapack
-L/usr/lib/R/lib -lRblas -lgfortran -lm -lgfortran -lm -L/usr/lib/R/lib
-lR
Thanks,
John
John Sorkin M.D., Ph.D.
Chief, Biostatistics and Informatics
Baltimore VA Medical Center GRECC,
University of Maryland School of Medicine Claude D. Pepper OAIC,
University of Maryland Clinical Nutrition Research Unit, and
Baltimore VA Center Stroke of Excellence
University of Maryland School of Medicine
Division of Gerontology
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
jsorkin at grecc.umaryland.edu>>> "Paul Smith" <phhs80 at gmail.com> 08/15/08 4:02 PM
>>>
On Fri, Aug 15, 2008 at 6:15 PM, John Sorkin
<jsorkin at grecc.umaryland.edu> wrote:> Fedora 9
> R 2.7.1
>
> I tried to install R on my Linux system using
> install.packages("Rcmdr", depen> I received many, many, many
error messages. I hope someone can suggest
a> fix.
>
> The output from warnings()
> is listed below. A more detailed list of errors from one of the failed
> installations is listed below the warnings:
Have you R-devel rpm installed?
Paul
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