R help - Jan 2008 - How to execute R code

Hi,

I have 'R' code in file. saved it as exmaple.r
here is the code.......

library("hopach")
GSE <-
read.table("gene_expression_data",sep="\t",header=TRUE,row.names=TRUE)
gene.dist <- distancematrix(t(GSE),d="euclid")
gene.hobj <- hopach(t(GSE), dmat=gene.dist, mss="med")
labelstosil(gene.hobj$cluster$label,gene.dist)


I dont know how to run it on linux terminal. Can you tell me how to
execute this file. I am using Debian linux.

Regards,
Praeek Singh

-- 
Prateek Singh
Final year Bioinformatics(BTech)
Vellore Institute Of Technology
Vellore-632014
ph.no. 09952187800
prateek.vit at gmail.com

Hi,

one possibility is to start R in a terminal window by entering
R
then R should be started.
now simply enter:
source(exmaple.r)
and everything should be fine.

Hope this helps,
Roland

Prateek Singh wrote:
> Hi,
> 
> I have 'R' code in file. saved it as exmaple.r
> here is the code.......
> 
> library("hopach")
> GSE <-
read.table("gene_expression_data",sep="\t",header=TRUE,row.names=TRUE)
> gene.dist <- distancematrix(t(GSE),d="euclid")
> gene.hobj <- hopach(t(GSE), dmat=gene.dist, mss="med")
> labelstosil(gene.hobj$cluster$label,gene.dist)
> 
> 
> I dont know how to run it on linux terminal. Can you tell me how to
> execute this file. I am using Debian linux.
> 
> Regards,
> Praeek Singh
>