Roger Liu
2007-Mar-16 00:26 UTC
[R] how to determine the relative distance between a DNA sequence and know genes
Hi, recently, I got a bunch of DNA sequences (with chromosome coordinate for each sequence), I would like to know the relative distance between these sequences and all the genes (genomic sequences) on human genome, i.e., are these sequences locate at upstream of the genes(5 prime end), downstream of the genes(3 prime end) or within the genes. I have about 8000 sequences. Any package, methods could help me? thanks. -zrl [[alternative HTML version deleted]]
Seemingly Similar Threads
- list genes w/n a genomic fragment
- Is that an efficient way to find the overlapped , upstream and downstream ranges for a bunch of ranges
- Is that an efficient way to find the overlapped , upstream and downstream rangess for a bunch of rangess
- Assigning genes to CBS segmented output:
- How to use Cox PH model to select genes from DNA gene expression profiles?
Wisdom of the Ancients
