I created a tex file following the example in the Sweave help which
produced the following files in my working directory.
Sweave-test-1-006.eps
Sweave-test-1-006.pdf
Sweave-test-1-007.eps
Sweave-test-1-007.pdf
Sweave-test-1.tex
When I run latex on this, I get a latex error, log file below. I am
running R 2.1.1 on Windows XP. I have installed "small MiKTeX" and I
have added "C:\Program Files\R\rw2011\share\texmf" to the roots of
MiKTex. The MiKTeX test ran fine after I installed it.
Any tips would be most appreciated.
This is e-TeX, Version 3.141592-2.2 (MiKTeX 2.4) (preloaded format=latex
2005.8.5) 6 AUG 2005 09:28
entering extended mode
**Sweave-test-1
(Sweave-test-1.tex
LaTeX2e <2003/12/01>
Babel <v3.8a> and hyphenation patterns for english, french, german,
ngerman, du
mylang, nohyphenation, loaded.
(C:\usr\texmf\tex\latex\base\article.cls
Document Class: article 2004/02/16 v1.4f Standard LaTeX document class
(C:\usr\texmf\tex\latex\base\size10.clo
File: size10.clo 2004/02/16 v1.4f Standard LaTeX file (size option)
)
\c at part=\count79
\c at section=\count80
\c at subsection=\count81
\c at subsubsection=\count82
\c at paragraph=\count83
\c at subparagraph=\count84
\c at figure=\count85
\c at table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(C:\usr\texmf\tex\latex\ltxmisc\a4wide.sty
Package: a4wide 1994/08/30
(C:\usr\texmf\tex\latex\ntgclass\a4.sty
Package: a4 1999/03/03 v1.2f A4 based page layout
))
! Missing \endcsname inserted.
<to be read again>
\protect
l.11 \begin
{document}
?
! Emergency stop.
<to be read again>
\protect
l.11 \begin
{document}
End of file on the terminal!
Here is how much of TeX's memory you used:
223 strings out of 95898
2212 string characters out of 1195177
46816 words of memory out of 1050593
3336 multiletter control sequences out of 35000
3640 words of font info for 14 fonts, out of 500000 for 1000
14 hyphenation exceptions out of 607
23i,0n,17p,117b,36s stack positions out of 1500i,500n,5000p,200000b,32768s
No pages of output.
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sosman wrote:> I created a tex file following the example in the Sweave help which > produced the following files in my working directory. > > Sweave-test-1-006.eps > Sweave-test-1-006.pdf > Sweave-test-1-007.eps > Sweave-test-1-007.pdf > Sweave-test-1.tex > > When I run latex on this, I get a latex error, log file below. I am > running R 2.1.1 on Windows XP. I have installed "small MiKTeX" and I > have added "C:\Program Files\R\rw2011\share\texmf" to the roots of > MiKTex. The MiKTeX test ran fine after I installed it. > > Any tips would be most appreciated.I think you need to ask on one of the Miktex lists. My guess would be that your problem is caused by using e-TeX, but I couldn't say for sure. Certainly the error is occurring entirely within MikTeX packages; you haven't got to the R stuff yet. My web page http://www.murdoch-sutherland.com/Rtools/miktex.html is getting kind of old, but it does tell you how to avoid using e-TeX. Duncan Murdoch> > This is e-TeX, Version 3.141592-2.2 (MiKTeX 2.4) (preloaded format=latex > 2005.8.5) 6 AUG 2005 09:28 > entering extended mode > **Sweave-test-1 > (Sweave-test-1.tex > LaTeX2e <2003/12/01> > Babel <v3.8a> and hyphenation patterns for english, french, german, > ngerman, du > mylang, nohyphenation, loaded. > (C:\usr\texmf\tex\latex\base\article.cls > Document Class: article 2004/02/16 v1.4f Standard LaTeX document class > (C:\usr\texmf\tex\latex\base\size10.clo > File: size10.clo 2004/02/16 v1.4f Standard LaTeX file (size option) > ) > \c at part=\count79 > \c at section=\count80 > \c at subsection=\count81 > \c at subsubsection=\count82 > \c at paragraph=\count83 > \c at subparagraph=\count84 > \c at figure=\count85 > \c at table=\count86 > \abovecaptionskip=\skip41 > \belowcaptionskip=\skip42 > \bibindent=\dimen102 > ) > (C:\usr\texmf\tex\latex\ltxmisc\a4wide.sty > Package: a4wide 1994/08/30 > > (C:\usr\texmf\tex\latex\ntgclass\a4.sty > Package: a4 1999/03/03 v1.2f A4 based page layout > )) > ! Missing \endcsname inserted. > <to be read again> > \protect > l.11 \begin > {document} > ? > ! Emergency stop. > <to be read again> > \protect > l.11 \begin > {document} > End of file on the terminal! > > > Here is how much of TeX's memory you used: > 223 strings out of 95898 > 2212 string characters out of 1195177 > 46816 words of memory out of 1050593 > 3336 multiletter control sequences out of 35000 > 3640 words of font info for 14 fonts, out of 500000 for 1000 > 14 hyphenation exceptions out of 607 > 23i,0n,17p,117b,36s stack positions out of 1500i,500n,5000p,200000b,32768s > No pages of output. > > > > > > ------------------------------------------------------------------------ > > \documentclass[a4paper]{article} > > \title{A Test File} > \author{Friedrich Leisch} > > > \usepackage{a4wide} > > \usepackage{C:/PROGRA~1/R/rw2011/share/texmf/Sweave} > \begin{document} > > \maketitle > > A simple example that will run in any S engine: The integers from 1 to > 10 are > \begin{Schunk} > \begin{Soutput} > [1] 1 2 3 4 5 6 7 8 9 10 > \end{Soutput} > \end{Schunk} > > We can also emulate a simple calculator: > \begin{Schunk} > \begin{Sinput} > >>1 + 1 > > \end{Sinput} > \begin{Soutput} > [1] 2 > \end{Soutput} > \begin{Sinput} > >>1 + pi > > \end{Sinput} > \begin{Soutput} > [1] 4.141593 > \end{Soutput} > \begin{Sinput} > >>sin(pi/2) > > \end{Sinput} > \begin{Soutput} > [1] 1 > \end{Soutput} > \end{Schunk} > > Now we look at Gaussian data: > > \begin{Schunk} > \begin{Soutput} > [1] 1.0549825921 1.0338743287 1.3960748544 0.8442504660 -1.3844903806 > [6] -0.1132289262 0.0340332855 0.0002775862 -1.0397650922 0.4255640780 > [11] -0.0101131650 -0.9338368343 -0.8404841222 0.1815343256 -0.0655929025 > [16] -0.6401327742 0.2787653149 -0.0940385332 -0.6531716561 -0.8501837369 > \end{Soutput} > \begin{Soutput} > One Sample t-test > > data: x > t = -0.4006, df = 19, p-value = 0.6932 > alternative hypothesis: true mean is not equal to 0 > 95 percent confidence interval: > -0.4281708 0.2906027 > sample estimates: > mean of x > -0.06878406 > \end{Soutput} > \end{Schunk} > Note that we can easily integrate some numbers into standard text: The > third element of vector \texttt{x} is 1.39607485443702, the > $p$-value of the test is 0.69319. % $ > > Now we look at a summary of the famous iris data set, and we want to > see the commands in the code chunks. Note that the summary needs to > be \texttt{print()}ed explicitly, because eval would discard it otherwise. I > consider this a feature, because it allows for much finer control on > what gets into the final report. > > > > % the following code is R-specific, as data(iris) will not run in Splus. > % Hence, we mark it as R code. > \begin{Schunk} > \begin{Sinput} > >>data(iris) >>print(summary(iris)) > > \end{Sinput} > \begin{Soutput} > Sepal.Length Sepal.Width Petal.Length Petal.Width > Min. :4.300 Min. :2.000 Min. :1.000 Min. :0.100 > 1st Qu.:5.100 1st Qu.:2.800 1st Qu.:1.600 1st Qu.:0.300 > Median :5.800 Median :3.000 Median :4.350 Median :1.300 > Mean :5.843 Mean :3.057 Mean :3.758 Mean :1.199 > 3rd Qu.:6.400 3rd Qu.:3.300 3rd Qu.:5.100 3rd Qu.:1.800 > Max. :7.900 Max. :4.400 Max. :6.900 Max. :2.500 > Species > setosa :50 > versicolor:50 > virginica :50 > \end{Soutput} > \end{Schunk} > > > \begin{figure}[htbp] > \begin{center} > \begin{Schunk} > \begin{Sinput} > >>library(graphics) >>pairs(iris) > > \end{Sinput} > \end{Schunk} > \includegraphics{Sweave-test-1-006} > \caption{Pairs plot of the iris data.} > \end{center} > \end{figure} > > \begin{figure}[htbp] > \begin{center} > \begin{Schunk} > \begin{Sinput} > >>boxplot(Sepal.Length ~ Species, data = iris) > > \end{Sinput} > \end{Schunk} > \includegraphics{Sweave-test-1-007} > \caption{Boxplot of sepal length grouped by species.} > \end{center} > \end{figure} > > > % R is not S-PLUS, hence this chunk will be ignored: > > \end{document} > > > > > ------------------------------------------------------------------------ > > ______________________________________________ > R-help at stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
I do not think that the file specification in
\usepackage{C:/PROGRA~1/R/rw2011/share/texmf/Sweave}
is supported....
Rather use \usepackage{Sweave} and put Sweave.sty somewhere in the
search path of LaTeX (either in some of its directories - do not forget
to 'texhash' - or in the local directory).
Uwe Ligges
sosman wrote:> I created a tex file following the example in the Sweave help which
> produced the following files in my working directory.
>
> Sweave-test-1-006.eps
> Sweave-test-1-006.pdf
> Sweave-test-1-007.eps
> Sweave-test-1-007.pdf
> Sweave-test-1.tex
>
> When I run latex on this, I get a latex error, log file below. I am
> running R 2.1.1 on Windows XP. I have installed "small MiKTeX"
and I
> have added "C:\Program Files\R\rw2011\share\texmf" to the roots
of
> MiKTex. The MiKTeX test ran fine after I installed it.
>
> Any tips would be most appreciated.
>
> This is e-TeX, Version 3.141592-2.2 (MiKTeX 2.4) (preloaded format=latex
> 2005.8.5) 6 AUG 2005 09:28
> entering extended mode
> **Sweave-test-1
> (Sweave-test-1.tex
> LaTeX2e <2003/12/01>
> Babel <v3.8a> and hyphenation patterns for english, french, german,
> ngerman, du
> mylang, nohyphenation, loaded.
> (C:\usr\texmf\tex\latex\base\article.cls
> Document Class: article 2004/02/16 v1.4f Standard LaTeX document class
> (C:\usr\texmf\tex\latex\base\size10.clo
> File: size10.clo 2004/02/16 v1.4f Standard LaTeX file (size option)
> )
> \c at part=\count79
> \c at section=\count80
> \c at subsection=\count81
> \c at subsubsection=\count82
> \c at paragraph=\count83
> \c at subparagraph=\count84
> \c at figure=\count85
> \c at table=\count86
> \abovecaptionskip=\skip41
> \belowcaptionskip=\skip42
> \bibindent=\dimen102
> )
> (C:\usr\texmf\tex\latex\ltxmisc\a4wide.sty
> Package: a4wide 1994/08/30
>
> (C:\usr\texmf\tex\latex\ntgclass\a4.sty
> Package: a4 1999/03/03 v1.2f A4 based page layout
> ))
> ! Missing \endcsname inserted.
> <to be read again>
> \protect
> l.11 \begin
> {document}
> ?
> ! Emergency stop.
> <to be read again>
> \protect
> l.11 \begin
> {document}
> End of file on the terminal!
>
>
> Here is how much of TeX's memory you used:
> 223 strings out of 95898
> 2212 string characters out of 1195177
> 46816 words of memory out of 1050593
> 3336 multiletter control sequences out of 35000
> 3640 words of font info for 14 fonts, out of 500000 for 1000
> 14 hyphenation exceptions out of 607
> 23i,0n,17p,117b,36s stack positions out of 1500i,500n,5000p,200000b,32768s
> No pages of output.
>
>
>
>
> ------------------------------------------------------------------------
>
> \documentclass[a4paper]{article}
>
> \title{A Test File}
> \author{Friedrich Leisch}
>
>
> \usepackage{a4wide}
>
> \usepackage{C:/PROGRA~1/R/rw2011/share/texmf/Sweave}
> \begin{document}
>
> \maketitle
>
> A simple example that will run in any S engine: The integers from 1 to
> 10 are
> \begin{Schunk}
> \begin{Soutput}
> [1] 1 2 3 4 5 6 7 8 9 10
> \end{Soutput}
> \end{Schunk}
>
> We can also emulate a simple calculator:
> \begin{Schunk}
> \begin{Sinput}
>
>>1 + 1
>
> \end{Sinput}
> \begin{Soutput}
> [1] 2
> \end{Soutput}
> \begin{Sinput}
>
>>1 + pi
>
> \end{Sinput}
> \begin{Soutput}
> [1] 4.141593
> \end{Soutput}
> \begin{Sinput}
>
>>sin(pi/2)
>
> \end{Sinput}
> \begin{Soutput}
> [1] 1
> \end{Soutput}
> \end{Schunk}
>
> Now we look at Gaussian data:
>
> \begin{Schunk}
> \begin{Soutput}
> [1] 1.0549825921 1.0338743287 1.3960748544 0.8442504660 -1.3844903806
> [6] -0.1132289262 0.0340332855 0.0002775862 -1.0397650922 0.4255640780
> [11] -0.0101131650 -0.9338368343 -0.8404841222 0.1815343256 -0.0655929025
> [16] -0.6401327742 0.2787653149 -0.0940385332 -0.6531716561 -0.8501837369
> \end{Soutput}
> \begin{Soutput}
> One Sample t-test
>
> data: x
> t = -0.4006, df = 19, p-value = 0.6932
> alternative hypothesis: true mean is not equal to 0
> 95 percent confidence interval:
> -0.4281708 0.2906027
> sample estimates:
> mean of x
> -0.06878406
> \end{Soutput}
> \end{Schunk}
> Note that we can easily integrate some numbers into standard text: The
> third element of vector \texttt{x} is 1.39607485443702, the
> $p$-value of the test is 0.69319. % $
>
> Now we look at a summary of the famous iris data set, and we want to
> see the commands in the code chunks. Note that the summary needs to
> be \texttt{print()}ed explicitly, because eval would discard it otherwise.
I
> consider this a feature, because it allows for much finer control on
> what gets into the final report.
>
>
>
> % the following code is R-specific, as data(iris) will not run in Splus.
> % Hence, we mark it as R code.
> \begin{Schunk}
> \begin{Sinput}
>
>>data(iris)
>>print(summary(iris))
>
> \end{Sinput}
> \begin{Soutput}
> Sepal.Length Sepal.Width Petal.Length Petal.Width
> Min. :4.300 Min. :2.000 Min. :1.000 Min. :0.100
> 1st Qu.:5.100 1st Qu.:2.800 1st Qu.:1.600 1st Qu.:0.300
> Median :5.800 Median :3.000 Median :4.350 Median :1.300
> Mean :5.843 Mean :3.057 Mean :3.758 Mean :1.199
> 3rd Qu.:6.400 3rd Qu.:3.300 3rd Qu.:5.100 3rd Qu.:1.800
> Max. :7.900 Max. :4.400 Max. :6.900 Max. :2.500
> Species
> setosa :50
> versicolor:50
> virginica :50
> \end{Soutput}
> \end{Schunk}
>
>
> \begin{figure}[htbp]
> \begin{center}
> \begin{Schunk}
> \begin{Sinput}
>
>>library(graphics)
>>pairs(iris)
>
> \end{Sinput}
> \end{Schunk}
> \includegraphics{Sweave-test-1-006}
> \caption{Pairs plot of the iris data.}
> \end{center}
> \end{figure}
>
> \begin{figure}[htbp]
> \begin{center}
> \begin{Schunk}
> \begin{Sinput}
>
>>boxplot(Sepal.Length ~ Species, data = iris)
>
> \end{Sinput}
> \end{Schunk}
> \includegraphics{Sweave-test-1-007}
> \caption{Boxplot of sepal length grouped by species.}
> \end{center}
> \end{figure}
>
>
> % R is not S-PLUS, hence this chunk will be ignored:
>
> \end{document}
>
>
>
>
> ------------------------------------------------------------------------
>
> ______________________________________________
> R-help at stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide!
http://www.R-project.org/posting-guide.html
sosman wrote:> I created a tex file following the example in the Sweave help which > produced the following files in my working directory.[snip] Thanks for the replies - I have worked around the problem by running latex on my Fedora machine. I will leave getting MiKTeX running to a rainy day. Actually after some further digging - I ended up using latex2html, I am using this for daily metrics and the main requirement is for presenting and annotating plots. cheers