search for: sinput

...weave and was wondering if anyone has had any luck changing the font colors of the code chunks. For instance, in my .Rnw preample I tried including: === \usepackage[usenames]{colors} \definecolor{darkred}{rgb}{0.545,0,0} \definecolor{midnightblue}{rgb}{0.098,0.098,0.439} \DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl,formatcom={\color{midnightblue}}} \DefineVerbatimEnvironment{Soutput}{Verbatim}{formatcom={\color{darkred}}} \DefineVerbatimEnvironment{Scode}{Verbatim}{fontshape=sl,formatcom={\color{blue}}} === which works in the sense that colors do show up in the processed pdf document,...

Dear all, I have trouble with R-beta sweaving files that include definitions with \SweaveInput in combination with keep.source = TRUE Symptom: SInput is taken from too far down the input file (the shift is the number of lines of the included file). Is that known? Searching didn't turn up anything, yet I think there are more people than just me using keep.source. Example: $ ~/tmp/R-beta/bin/R CMD Sweave baseline.Rnw && mv baseline.t...

I created a tex file following the example in the Sweave help which produced the following files in my working directory. Sweave-test-1-006.eps Sweave-test-1-006.pdf Sweave-test-1-007.eps Sweave-test-1-007.pdf Sweave-test-1.tex When I run latex on this, I get a latex error, log file below. I am running R 2.1.1 on Windows XP. I have installed "small MiKTeX" and I have added

Hi, I'm trying to latex part of my R- code and don't know where to find the sinput package to include in my version of miktex (I have the LINUX version handy, but need also the Windows one) Any idea? (sorry it is not really a R question) Thanks Isotta --------------------------------- [[alternative HTML version deleted]]

Hi, I am having trouble getting \alt (or \altenv) to work with Schunk/Sinput and was wondering if anybody had had success? With the slide \begin{frame}[fragile]\frametitle{Basic R} \alt<2>{ <<echo=TRUE>>= 2+2 @ }{ <<echo=TRUE, eval=FALSE>>= 2+2 @ } \end{frame} I get the error message: ! FancyVerb Error: Extraneous input `> 2+2 \end...

...\documentclass{article} \title {test} \author {me} \usepackage{Sweave} \begin {document} \maketitle \DeclareGraphicsExtensions{.pdf,.png} \begin {figure} \includegraphics{test-fig1} \caption { This is the caption with some r-code \begin{Schunk} \begin{Sinput} > 2*2 \end{Sinput} \begin{Soutput} [1] 4 \end{Soutput} \end{Schunk} } \label {fig:1} \end {figure} \end{document}

...m verbatim (label = 1) 2 : keep.source term verbatim pdf (label = 2) You can now run (pdf)latex on ‘test.tex’ It works as it should except for \Sexpr \documentclass{article} \title{Sweave minimmal} \author{MK} \usepackage{Sweave} \begin{document} \maketitle We try Sweave: \begin{Schunk} \begin{Sinput} > data(airquality) > summary(airquality) \end{Sinput} \begin{Soutput} Ozone Solar.R Wind Temp Month Day Min. : 1.0 Min. : 7 Min. : 1.70 Min. :56.0 Min. :5.00 Min. : 1.0 1st Qu.: 18.0 1st Qu.:116 1st Qu....

...tricks to get gradient shading, etc. The problem is that the default environments used by Sweave don't work where I need them. A simple code chunk like <<eval=FALSE>>= x <- 1 @ buried in a minipage within a psshadowbox gives the error Runaway argument? > x <- 1 \end {Sinput} \end {Schunk} and the resulting variable would\ETC. D:/test.tex:302: Paragraph ended before \FV@ BeginScanning was complete Has anyone solved this problem? One way I see that might work is to put the code chunk outside the environment and use SaveVerbatim to save it, then just put \BUseVerbat...

...unexpected numeric constant 42: .828 43: .776 .779 ^ Is there some switch or option for Sweave that will make this work? Below is the slide in question in an executable example: \documentclass[dvipsnames,pdflatex,compress,beamer]{beamer} \usepackage{Sweave} \definecolor{Sinput}{rgb}{1,0,0} \definecolor{Scode}{rgb}{0,0,0.56} \definecolor{Soutput}{rgb}{0,0,1} \DefineVerbatimEnvironment{Sinput}{Verbatim}{formatcom={\color{Sinput}},fontsize=\footnotesize,baselinestretch=0.9} \DefineVerbatimEnvironment{Soutput}{Verbatim}{formatcom={\color{Soutput}},fontsize=\footnotesize,base...

I'm trying to learn Sweave. So far things are going well with the chunks of code identified by << >>= But I'm having trouble with the in-line text use of \Sexpr. Here is a short example .Rnw file: \documentclass[12pt]{article} \usepackage[margin=1.25in]{geometry} \usepackage{graphicx} \usepackage{Sweave} \begin{document} <<test>>= pnorm(1) @ \Sexpr{2+6}

...9;,'b','b','a','c','c','d','a'), l.14 + V1=c('a','b','b','a','c','c','d','a'), \documentclass{article} \usepackage{Sweave} \begin{document} This is a test. \begin{Schunk} \begin{Sinput} > (x <- 1+2) \end{Sinput} \begin{Soutput} [1] 3 \end{Soutput} \begin{Sinput} > test <- data.frame( + V1=c('a','b','b','a','c','c','d','a'), + V27=c('1-oct-2004', '3-jan-2005','4-jan-2005',...

...tate.area), pop=mean(state.pop), hop=mean(state.area)) c(medianarea=median(state.area), medianpop=median(state.pop)) c(medianarea=median(median(state.area)), medianpop=median(state.pop)) @ ---------------------------------------------------------------------- bug.tex \begin{Schunk} \begin{Sinput} > options(width = 55) > data(state) > data.frame(area = mean(state.area), pop = mean(state.pop), + hop = mean(state.area)) \end{Sinput} \begin{Soutput} area pop hop 1 72367.98 4246420 72367.98 \end{Soutput} \begin{Sinput} > c(medianarea = median(state.area), media...

...chunk (in Sweave) which is longer then the margins of the page. Is there a way to force it to "go to the next line" (in Sweave) once that happens? Here are two cases this happens in the resulting .tex file (one is a "hard" case, and the other is simpler) \begin{Schunk} \begin{Sinput} > print("aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa") \end{Sinput} \begin{Soutput} [1] "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa&quot...

...Friends, I not sure whether this is an Sweave or a beamer problem. The Rnw file: \documentclass[compress,smaller]{beamer} %\documentclass{article} %\usepackage{beamerarticle} \usepackage{Sweave} \title{Psychophysics II} \date{September 9, 2008} \begin{document} \frame{ \begin{Schunk} \begin{Sinput} > ro <- 0.2 > c <- seq(from = -3, to = 4, by = 0.1) > fn <- 1 - pnorm(c) > fo <- 1 - pnorm(c, mean = 1) > h <- fo + ro - ro * fo > f <- fn > plot(h ~ f, type = "l", asp = 1, xlim = c(0.01, 1.01), ylim = c(0.01, 1.01), las = 1, xlab = "...

...to document some R scripts for my collegues and observed the problem, that Sweave strips comment lines away. As a small example I write in an Rtex file: \begin{Scode} ## a small example test() # line comment \end{Scode} ... the .tex file generated by Sweave only contains: \begin{Schunk} \begin{Sinput} test() \end{Sinput} \end{Schunk} ... and all the comments are lost. Looking into the archives, I found, that such a question appeared already some months ago. Are there any advances or workarounds doing such things today? Thank you in advance! Thomas P.

Dear [R] and beamer community, I am trying to build a presentation using beamer and [R]. I can Sweave the file; however, when I run pdflatex on the file i get the following error: ! FancyVerb Error: Extraneous input `> a = 123450 > b = -0.69 \end {Sinput} \end {Schunk} \end { beamer at frameslide}\ifbeamer at twoscreenstext \beamer at dosecondscreennow {{fragile} \frametitle {Numbers} \textbf {Numbers} can be represented in a variety of dif ferent formats. For example the number $1.2345\times 10^5$ is written as 1.234e +05 in \texttt {R}. \begin {...

...to document some R scripts for my collegues and observed the problem, that Sweave strips comment lines away. As a small example I write in an Rtex file: \begin{Scode} ## a small example test() # line comment \end{Scode} ... the .tex file generated by Sweave only contains: \begin{Schunk} \begin{Sinput} test() \end{Sinput} \end{Schunk} ... and all the comments are lost. Looking into the archives, I found, that such a question appeared already some months ago. Are there any advances or workarounds doing such things today? Thank you in advance! Thomas P.

...data(bronchit); library(KernSmooth) > @ % > > Code for panel A is > <<code-xycig-A, eval=f, echo=t>>= > <<xycig-A>> > @ % Sweave("semicolon") yields the following 'semicolon.tex' > Code for panel A is > \begin{Schunk} > \begin{Sinput} >> library(SMIR); data(bronchit); library(KernSmooth) >> library(SMIR); data(bronchit); library(KernSmooth) >> library(SMIR); data(bronchit); library(KernSmooth) > \end{Sinput} > \end{Schunk} (I have omitted three blank lines at the start) With keep.source=FALSE, the comm...

...FALSE,keep.source=TRUE>>= data(cars) m1 <- lm( dist~speed, data=cars ) @ <<echo=TRUE,results=verbatim,fig=FALSE,keep.source=TRUE>>= <<TESTME2>> @ After running Sweave over this file in R, the output file (eg. test.tex) looks like this: \begin{Schunk} \begin{Sinput} > data(cars) > m1 <- lm( dist~speed, data=cars ); coef( m1 ) > m1 <- lm( dist~speed, data=cars ); coef( m1 ) \end{Sinput} \begin{Soutput} (Intercept) speed -17.579095 3.932409 \end{Soutput} \end{Schunk} \begin{Schunk} \begin{Sinput} > data(cars) > m1 <- lm( d...

Tha handy thinb about the fig=TRUE option in Sweave is that you do not have to bother about filenames and starting and stpping the device. I want the the resulting LaTeX to look as: \begin{Schunk} \begin{Sinput} > x <- seq(-2 * pi, 2 * pi, 0.1) > plot(x, cos(x), type = "l", lwd = 4) \end{Sinput} \end{Schunk} \begin{figure} \includegraphics[width=0.6\textwidth]{xx-001} \end{figure} i.e. with options to the \includegraphics and all embedded in a figure environment. 1) Is there a way to...