Dear R-helpers,
I am developing a package named LDehatmap.
It depends on the "genetics" package
and includes two data files and a demo file.
When I'm trying to install it, I get the following messages:
* Installing *source* package 'LDheatmap' ...
** R
** data
** demo
** help
>>> Building/Updating help pages for package 'LDheatmap'
Formats: text html latex example
LDheatmap text html latex example
ldheatmap text html latex example
Error: object 'reorder' not found whilst loading namespace
'gdata'
Error: package 'gdata' could not be loaded
Execution halted
ERROR: installing package indices failed
Any ideas?
Thanks,
Sigal
On Fri, 19 Nov 2004, Sigal Blay wrote:> Dear R-helpers, > > I am developing a package named LDehatmap. > It depends on the "genetics" package > and includes two data files and a demo file. > When I'm trying to install it, I get the following messages: > > * Installing *source* package 'LDheatmap' ... > ** R > ** data > ** demo > ** help > >>> Building/Updating help pages for package 'LDheatmap' > Formats: text html latex example > LDheatmap text html latex example > ldheatmap text html latex example > Error: object 'reorder' not found whilst loading namespace 'gdata' > Error: package 'gdata' could not be loaded > Execution halted > ERROR: installing package indices failed > > Any ideas?Yes. You do not have gdata (part of gregmisc) installed, and genetics depends on it. How did you get genetics installed? A binary install? Install gregmisc .... -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
gregmisc is installed yet the problem persist.
I installed gregmisc using
install.packages(c("combinat","gregmisc","genetics"),lib='/home/sblay/lib')
(on the same library path where I am trying to install LDheatmap)
> installed.packages(lib='/home/sblay/lib')
Package LibPath Version Priority Bundle
combinat "combinat" "/home/sblay/lib" "0.0-5" NA
NA
gdata "gdata" "/home/sblay/lib" "2.0.0" NA
"gregmisc"
genetics "genetics" "/home/sblay/lib" "1.1.1" NA
NA
gmodels "gmodels" "/home/sblay/lib" "2.0.0" NA
"gregmisc"
gplots "gplots" "/home/sblay/lib" "2.0.0" NA
"gregmisc"
gtools "gtools" "/home/sblay/lib" "2.0.0" NA
"gregmisc"
LDheatmap "LDheatmap" "/home/sblay/lib" "1.0" NA
NA
...
> I am developing a package named LDehatmap.
> It depends on the "genetics" package
> and includes two data files and a demo file.
> When I'm trying to install it, I get the following messages:
>
> * Installing *source* package 'LDheatmap' ...
> ** R
> ** data
> ** demo
> ** help
> >>> Building/Updating help pages for package 'LDheatmap'
> Formats: text html latex example
> LDheatmap text html latex example
> ldheatmap text html latex example
> Error: object 'reorder' not found whilst loading namespace
'gdata'
> Error: package 'gdata' could not be loaded
> Execution halted
> ERROR: installing package indices failed
>
> Any ideas?
Yes. You do not have gdata (part of gregmisc) installed, and genetics
depends on it. How did you get genetics installed? A binary install?
Install gregmisc ....