Displaying 20 results from an estimated 3000 matches similar to: "ERROR: installing package indices failed"
2005 May 04
2
loading gap package
Dear R users,
I did install R. 2.0.1, and try to load "gap" package.
However, below is the message shown when I did load it. Can anybody
please let me know my mistakes?
----
> library()
> library(gap)
Loading required package: MASS
Loading required package: genetics
Loading required package: combinat
Loading required package: gdata
Error: package 'gdata' could not be
2005 May 04
4
Unbundling gregmisc (was: loading gap package)
Let me redirect the topic a bit. I've been considering unbundling gregmisc.
The pro would be that people would find the component packages (i.e. gdata)
more easily. The con is that the packages have a number of
interdependencies, so you pretty much will need to get most of them anyway.
As the latest gregmisc bundle contains a gregmisc package that is just a
stub that depends on and loads
2005 May 04
4
Unbundling gregmisc (was: loading gap package)
Let me redirect the topic a bit. I've been considering unbundling gregmisc.
The pro would be that people would find the component packages (i.e. gdata)
more easily. The con is that the packages have a number of
interdependencies, so you pretty much will need to get most of them anyway.
As the latest gregmisc bundle contains a gregmisc package that is just a
stub that depends on and loads
2005 Jun 08
2
CRAN task view for genetics
Hello to everyone!
I have built CRAN task view for genetics. For now I have not submit it
to CRAN yet and it can be accessible from:
http://www.bfro.uni-lj.si/MR/ggorjan/software/R/Genetics.html
http://www.bfro.uni-lj.si/MR/ggorjan/software/R/Genetics.ctv
I have not submitted it to CRAN, since I would like first some opinion
about it. Genetics is really so broad field that I belive one person
2003 May 22
3
How to avoid function masking
Hi All,
I've been working on updating the 'genetics' package. As a consequence of
the upgrade, .First.lib() looks like:
.First.lib <- function(libname, pkgname)
{
if (!require(combinat))
warning("Unable to load 'combinat' library. Function
`diseq.ci' will fail.")
require(gregmisc)
genotype <-
2010 Jun 23
1
reg: R genetics problem
Dear Sir,
We need to use genetics packages at our end. We have installed R packages. When i try to choose genetics package and install, it is giving an error. Please see the attachment for the error. How can i resolve it and make it work?
Thanking you
A Padmavathi Devi
Technical Officer
Centre for Cellular and Molecular Biology
Ph.No:27192776
"The person addressed in the email is the sole
2004 Oct 10
1
How to install a package that needs to see oher pkg dependencies:
Hi,
I am trying to install the genetics package on a server with Linux,
Fedora. I installed it in a PC and worked fine.
In a server since I am not used with R, I am not sure what do I need to
change so genetics pkg can see some package dependencies:
Any suggestion is appreciated, Aldi
Note:
genetics expects gregmisc and mvtnorm to be installed already. gregmisc
creates gdata etc dependencies.
2005 Jan 05
1
install.packages and bundles
Hi All,
Since I changed the gregmisc package into a bundle, I almost daily questions
asking how to get the individual packages contained in the bundle.
The standard example arises when someone attempts to install and then use my
'genetics' package which depends on the 'gdata' package contained within the
'gregmisc' bundle. The install succedes, but when the user does
2006 Mar 16
1
handling warning messages
Is there any way to store the value of warnings but avoid printing them?
A simplified example:
> out <- c(0.2,0.3,0.4)
> var <- c(2,3,4)
> outcome <- glm(out ~ var, family=binomial())
Warning message:
non-integer #successes in a binomial glm! in: eval(expr, envir, enclos)
I don't like the warning printed,
but I would like to be able to check it's value after the
2010 Feb 20
1
Problem with installing "genetics" package
I have tried to install the "genetics" package and am getting and error.
The log is below. For information, I am using R 2.10.1 on the Windows
XP operating system. The mirror site I'm using is Michigan Technological
University.
Your help in this matter will be greatly appreciated.
Murray M Cooper, PhD
Richland Statistics
9800 North 24th St
Richland, MI, USA 49083
2007 May 30
3
sizing and saving graphics in R
Dear R wizards,
I am seeking advice on graphics in R. Specifically, how to manipulate
the size and save a plot I have produced using the LDheatmap library.
I confess I am relatively new to graphics in R, but I would greatly
appreciate any suggestions you may have.
LDheatmap produces a coloured triangular matrix of pairwise
associations between 600 genetic markers in my dataset.
2006 Mar 12
0
New version of the LDheatmap package
Version 0.2 of the package LDheatmap is now on CRAN. The main function
LDheatmap produces a graphical display, as a heat map, of measures of
pairwise linkage disequilibria between SNPs. Users may optionally
include the physical locations or genetic map distances of each SNP on
the plot.
The revisions to the package are aimed at improving the user's ability
to modify and annotate the
2010 Nov 28
3
Where is gdata?
Hi folks,
Win 7 64 bit
R 32 bit
> install.packages("gregmisc")
Installing package(s) into ‘C:\Users\satimiswin764\Documents/R/win-library/2.12’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
also installing the dependency ‘gmodels’
trying URL
'http://cran.ms.unimelb.edu.au/bin/windows/contrib/2.12/gmodels_2.15.0.zip'
Content type
2009 Jun 02
1
C++ to R : 64bit to 32bit problem.
Hi,
I'm new to calling C++/C programs from R and am having some trouble getting
started. Following Sigal Blay (Simon Fraser University)'s instructions, I
have a .c file called "useC1.c":
/* useC1.c */
void useC(int *i) {
i[0] = 11;
}
This produces a .o file : "useC1.o" in a specified directory. I then open
R, set the proper directory and:
2010 May 01
3
Resize Graphics Window
Need way to resize an existing graphics window.
This should be applicable across platforms (as part of a package).
Context: function1() draws main plot (I'm using grid), function2() adds smaller plot
above main plot, but this one can sometimes overflow the original graphics window
area.
Thanks,
Sigal
2005 Mar 10
4
Gregmisc
Dear all,
I use R 2.0.1 on Windows XP professional. When I want to load the
'Gregmisc' library I get the following error message:
Error in library(pkg, character.only = TRUE) : 'gregmisc' is not a
valid package -- installed < 2.0.0?
Can anybody tell me what's wrong with this package?
Cheers, Christian
2004 Sep 17
1
R-2.0.0 Install problem for package bundle with inter-dependent n amespaces
I have a revised version of the gregmisc package, which I've converted into
a package bundle each of which has a namespace: gplots, gmodels, gdata,
gtoools. Of course, there are interdependencies among these namespaces:
gsun374: /tmp [11]> cd gregmisc/
gsun374: gregmisc [12]> grep import */NAMESPACE
gdata/NAMESPACE:importFrom(gtools, odd, invalid, mixedsort)
2005 Mar 10
4
dealing with package bundles (was RE: Gregmisc)
Given the confusions that some users have regarding package bundles, I'd
like to suggest some changes to how package bundles are handled.
My understanding is that a package bundle is essentially a convenient way to
distribute related packages, so that users can download/install them in one
shot. However, some users apparently get confused that one can do
install.packages("abundle")
2005 Mar 10
4
dealing with package bundles (was RE: Gregmisc)
Given the confusions that some users have regarding package bundles, I'd
like to suggest some changes to how package bundles are handled.
My understanding is that a package bundle is essentially a convenient way to
distribute related packages, so that users can download/install them in one
shot. However, some users apparently get confused that one can do
install.packages("abundle")
2011 Jul 03
1
PROBLEM IN R version 2.13.0 (2011-04-13)
I am using R (version 2.13.0; 2011-04-13). Platform: x86_64-pc-mingw32/x64
(64-bit).
The messages that I see is
“This application has requested the Runtime to terminate it in an unusual
way.
Please contact the application's support team for more information”
I am using the following libraries:
> library(package="gmodels")
> library(package="gtools")