Ulf Dagman (EAB)
2003-Jun-06 07:49 UTC
[R] Problerm building R-1.7.0 on OpenBSD3.2/sparc64
Hi all,
I try to build R-1.7.0 + patches. when problem arise.
I start with appling the patches and second configure and make.
Any ideas whats wrong (wrong compiler wrong make version or missing an essential
library...)
/Ulf D
heres the log:
**** cut************
making method_meta_data.d from method_meta_data.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
`Makedeps' is up to date.
gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c do_substitute
_direct.c -o do_substitute_direct.o
gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c methods_list_
dispatch.c -o methods_list_dispatch.o
gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c method_meta_d
ata.c -o method_meta_data.o
gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c slot.c -o slo
t.o
gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c class_support
.c -o class_support.o
gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c tests.c -o te
sts.o
gcc -shared -L/usr/local/lib -o methods.so do_substitute_direct.o methods_list_d
ispatch.o method_meta_data.o slot.o class_support.o tests.o mkdir -p --
../../../../library/methods/libs
dumping R code in package 'methods'
/home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m
ethods/libs/methods.so: can't resolve reference 'R_GlobalEnv'
/home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m
ethods/libs/methods.so: can't resolve reference 'R_NamesSymbol'
/home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m
ethods/libs/methods.so: can't resolve reference 'R_MissingArg'
/home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m
ethods/libs/methods.so: can't resolve reference 'R_NilValue'
/home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m
ethods/libs/methods.so: can't resolve reference 'R_DotsSymbol'
/home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m
ethods/libs/methods.so: can't resolve reference 'R_UnboundValue'
Error in .Call("R_initialize_methods_metadata", table, PACKAGE =
"methods") :
.Call function name not in load table
Execution halted
*** Error code 1
Stop in /home/test/proj/downl/R-1.7.0/src/library/methods (line 70 of Makefile).
*** Error code 1
Stop in /home/test/proj/downl/R-1.7.0/src/library/methods (line 18 of Makefile).
*** Error code 1
Stop in /home/test/proj/downl/R-1.7.0/src/library (line 39 of Makefile).
*** Error code 1
Stop in /home/test/proj/downl/R-1.7.0/src (line 29 of Makefile).
*** Error code 1
Stop in /home/test/proj/downl/R-1.7.0 (line 62 of Makefile).
bash-2.05b$
********end logg *******
Prof Brian Ripley
2003-Jun-06 08:21 UTC
[R] Problerm building R-1.7.0 on OpenBSD3.2/sparc64
Looks like that OS wants all symbols resolved: those are all variables exported by R.bin. 1) See if there is a ld flag to allow unresolved symbols. 2) (something of a kludge) configure with --enable-R-shared and rebuild (from scratch), as this will link against the libR.so. Whether that works correctly will be OS-dependent, since you realy want them resolved against R.bin when methods.so is loaded. On Fri, 6 Jun 2003, Ulf Dagman (EAB) wrote:> Hi all, > > I try to build R-1.7.0 + patches. when problem arise. > I start with appling the patches and second configure and make. > > Any ideas whats wrong (wrong compiler wrong make version or missing an essential library...)Wrong flags, probably.> > /Ulf D > > heres the log: > **** cut************ > making method_meta_data.d from method_meta_data.c > making slot.d from slot.c > making class_support.d from class_support.c > making tests.d from tests.c > `Makedeps' is up to date. > gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c do_substitute > _direct.c -o do_substitute_direct.o > gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c methods_list_ > dispatch.c -o methods_list_dispatch.o > gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c method_meta_d > ata.c -o method_meta_data.o > gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c slot.c -o slo > t.o > gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c class_support > .c -o class_support.o > gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c tests.c -o te > sts.o > gcc -shared -L/usr/local/lib -o methods.so do_substitute_direct.o methods_list_d > ispatch.o method_meta_data.o slot.o class_support.o tests.o mkdir -p -- ../../../../library/methods/libs > dumping R code in package 'methods' > /home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m > ethods/libs/methods.so: can't resolve reference 'R_GlobalEnv' > /home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m > ethods/libs/methods.so: can't resolve reference 'R_NamesSymbol' > /home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m > ethods/libs/methods.so: can't resolve reference 'R_MissingArg' > /home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m > ethods/libs/methods.so: can't resolve reference 'R_NilValue' > /home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m > ethods/libs/methods.so: can't resolve reference 'R_DotsSymbol' > /home/test/proj/downl/R-1.7.0/bin/R.bin: /home/test/proj/downl/R-1.7.0/library/m > ethods/libs/methods.so: can't resolve reference 'R_UnboundValue' > Error in .Call("R_initialize_methods_metadata", table, PACKAGE = "methods") : > .Call function name not in load table > Execution halted > *** Error code 1 > > Stop in /home/test/proj/downl/R-1.7.0/src/library/methods (line 70 of Makefile). > *** Error code 1 > > Stop in /home/test/proj/downl/R-1.7.0/src/library/methods (line 18 of Makefile). > *** Error code 1 > > Stop in /home/test/proj/downl/R-1.7.0/src/library (line 39 of Makefile). > *** Error code 1 > > Stop in /home/test/proj/downl/R-1.7.0/src (line 29 of Makefile). > *** Error code 1 > > Stop in /home/test/proj/downl/R-1.7.0 (line 62 of Makefile). > bash-2.05b$ > ********end logg ******* > > ______________________________________________ > R-help at stat.math.ethz.ch mailing list > https://www.stat.math.ethz.ch/mailman/listinfo/r-help >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595