Hello -
I'm trying to compile R 1.7.0 on a PowerBook running OS X 10.2.5. I've
compiled R (1.6.2) successfully before on this machine, under either
10.2.3 or 10.2.4. My gcc is from the latest Apple Developer Tools
release and the g77 is up-to-date via Fink. R passes ./configure just
fine, with the following options:
R is now configured for powerpc-apple-darwin6.5
Source directory: .
Installation directory: /usr/local
C compiler: gcc -g -O2
C++ compiler: g++ -g -O2
Fortran compiler: g77 -g -O2
Interfaces supported: X11, tcltk
External libraries:
Additional capabilities: PNG, JPEG, bzip2, PCRE
Options enabled: R profiling
Recommended packages: yes
Compilation proceeds as normal for a while (though with occasional
warnings), and then terminates with the following series of warnings
and errors:
gcc -bundle -flat_namespace -undefined suppress -L/sw/lib
-L/usr/local/lib -o R_X11.so dataentry.lo devX11.lo rotated.lo
rbitmap.lo -lSM -lICE -L/usr/X11R6/lib -lX11 -ljpeg -lpng -lz -lbz2
-lz -ldl -lncurses -lm
ld: warning dynamic shared library: /usr/lib/libz.dylib not made a weak
library in output with MACOSX_DEPLOYMENT_TARGET environment variable
set to: 10.1
/Users/kjhealy/downloads/R-1.7.0/modules/R_X11.so is unchanged
making Rsock.d from Rsock.c
making internet.d from internet.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
gcc -no-cpp-precomp -I. -I../../../src/include -I../../../src/include
-I/sw/include -I/usr/local/include -DHAVE_CONFIG_H -fno-common -g -O2
-c Rsock.c -o Rsock.lo
Rsock.c: In function `R_SockConnect':
Rsock.c:380: warning: passing arg 5 of `getsockopt' from incompatible
pointer type
gcc -no-cpp-precomp -I. -I../../../src/include -I../../../src/include
-I/sw/include -I/usr/local/include -DHAVE_CONFIG_H -fno-common -g -O2
-c internet.c -o internet.lo
gcc -no-cpp-precomp -I. -I../../../src/include -I../../../src/include
-I/sw/include -I/usr/local/include -DHAVE_CONFIG_H -fno-common -g -O2
-c nanoftp.c -o nanoftp.lo
nanoftp.c: In function `RxmlNanoFTPGetConnection':
nanoftp.c:1175: warning: passing arg 3 of `getsockname' from
incompatible pointer type
nanoftp.c:1182: warning: passing arg 3 of `getsockname' from
incompatible pointer type
gcc -no-cpp-precomp -I. -I../../../src/include -I../../../src/include
-I/sw/include -I/usr/local/include -DHAVE_CONFIG_H -fno-common -g -O2
-c nanohttp.c -o nanohttp.lo
nanohttp.c: In function `RxmlNanoHTTPConnectAttempt':
nanohttp.c:909: warning: passing arg 5 of `getsockopt' from
incompatible pointer type
gcc -no-cpp-precomp -I. -I../../../src/include -I../../../src/include
-I/sw/include -I/usr/local/include -DHAVE_CONFIG_H -fno-common -g -O2
-c sock.c -o sock.lo
sock.c: In function `Sock_listen':
sock.c:189: warning: passing arg 3 of `accept' from incompatible
pointer type
gcc -no-cpp-precomp -I. -I../../../src/include -I../../../src/include
-I/sw/include -I/usr/local/include -DHAVE_CONFIG_H -fno-common -g -O2
-c sockconn.c -o sockconn.lo
gcc -bundle -flat_namespace -undefined suppress -L/sw/lib
-L/usr/local/lib -o internet.so Rsock.lo internet.lo nanoftp.lo
nanohttp.lo sock.lo sockconn.lo
making Lapack.d from Lapack.c
g77 -fno-common -g -O2 -c dlapack0.f -o dlapack0.lo
g77 -fno-common -g -O2 -c dlapack1.f -o dlapack1.lo
g77 -fno-common -g -O2 -c dlapack2.f -o dlapack2.lo
g77 -fno-common -g -O2 -c dlapack3.f -o dlapack3.lo
g77 -fno-common -g -O2 -c cmplx.f -o cmplx.lo
g77 -fno-common -g -O2 -c cmplxblas.f -o cmplxblas.lo
gcc -dynamiclib -install_name /usr/local/lib/R/bin/libRlapack.dylib
-L/sw/lib -L/usr/local/lib -o libRlapack.dylib dlapack0.lo dlapack1.lo
dlapack2.lo dlapack3.lo cmplx.lo cmplxblas.lo -L/sw/lib
-L/usr/local/lib -L/sw/lib/gcc-lib/powerpc-apple-darwin6.2/3.1
-L/sw/lib/gcc-lib/powerpc-apple-darwin6.2/3.1/../../.. -lfrtbegin -lg2c
-lSystem
ld: common symbols not allowed with MH_DYLIB output format with the
-multi_module option
/sw/lib/libg2c.a(err.o) definition of common _f__cblank (size 4)
/sw/lib/libg2c.a(fmt.o) definition of common _f__cnt (size 40)
/sw/lib/libg2c.a(fmt.o) definition of common f(char, *) (size 4)
/sw/lib/libg2c.a(err.o) definition of common f(char, long *, short
__restrict) (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__cursor (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__doed (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__doend (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__doned (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__dorevert (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__elist (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__fmtbuf (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__fmtlen (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__init (size 4)
/sw/lib/libg2c.a(fmt.o) definition of common _f__nonl (size 4)
/sw/lib/libg2c.a(fmt.o) definition of common _f__parenlvl (size 4)
/sw/lib/libg2c.a(fmt.o) definition of common f(char *) (size 4)
/sw/lib/libg2c.a(fmt.o) definition of common _f__ret (size 40)
/sw/lib/libg2c.a(fmt.o) definition of common _f__revloc (size 4)
/sw/lib/libg2c.a(fmt.o) definition of common f(long double, *) (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__scale (size 4)
/sw/lib/libg2c.a(fmt.o) definition of common _f__workdone (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__units (size 4800)
/sw/lib/libg2c.a(err.o) definition of common f(char, float) (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__curunit (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__donewrec (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__external (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__formatted (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__hiwater (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__putn (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__reading (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__recpos (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__sequential (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__getn (size 4)
/sw/lib/libg2c.a(err.o) definition of common _f__icptr (size 4)
/sw/lib/libg2c.a(err.o) definition of common f(short, void, int, char)
(size 4)
/usr/bin/libtool: internal link edit command failed
make[4]: *** [libRlapack.dylib] Error 1
make[3]: *** [R] Error 2
make[2]: *** [R] Error 1
make[1]: *** [R] Error 1
make: *** [R] Error 1
Any idea what I'm missing/doing wrong here?
--
Kieran Healy, http://www.u.arizona.edu/~kjhealy
Asst Professor, Sociology Dept, University of Arizona.