search for: precomp

Dear All, I have problem installing the 'kinship' package. I used the 'install.packages' from R command line and had no problem installing other packages before. Here is what I get: * Installing *source* package 'kinship' ... ** libs gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c agfit6b.c -o agfit6b.o gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c bdsmatrix_index1.c -o bdsmatrix_index1.o gcc -no-cpp-precomp...

...: Makefile.perl: No such file or directory make: *** No rule to make target `Makefile.perl'. Stop. chmod: blib/lib/R.pm: No such file or directory Finished configuration ** libs ** arch - i386 gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -I/usr/local/include -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE -D_R_=1 -DUS...

...The binary version of gap currently available on CRAN has some bug and is fixed in the latest version. The message I get from R is below. Any help is greatly appreciated. best regards, Kenny Ye tar: Read 1536 bytes from - * Installing *source* package 'gap' ... ** libs gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c 2k.c -o 2k.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c 2ld.c -o 2ld.o gcc-3.3 -no-cpp-precomp -I/Library/Framework...

...checking size of double... 8 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 4 configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/swap_bytes.h config.status: creating src/var.h ** libs gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -Wno-long-long -fno-common -g -O2 -c R_systat.c -o R_systat.o gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -Wno-long-long -fno-common -g -O2 -c Rdbfread.c -o Rdbf...

...ols installed) and I am having trouble compiling the libraries. The error message I receive is as follows (I have only included the error message when I try and install the rmutil library): ............................ * Installing *source* package 'rmutil' ... ** libs gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c cutil.c -o cutil.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c dist.c -o dist.o g77 -fno-common -g -O2 -c gettvc.f -o gettvc...

...It will return a bunch of paths. Look for the one which is similar to the one above. Note that Oracle is only certified for gcc 2.95 or before. RH 7.3 comes installed with 2.96. You will have to copy gcc 2.95 from another machine which has it 3> make sure the pcscfg.cfg file under $ORACLE_HOME/precomp/admin looks like sys_include=($ORACLE_HOME/precomp/public,/usr/lib/gcc-lib/i386-redhat-li nux/egcs-2.91.66/include,/usr/include) include=($ORACLE_HOME/precomp/public) include=($ORACLE_HOME/rdbms/demo) include=($ORACLE_HOME/network/public) include=($ORACLE_HOME/plsql/public) ltype=short The 2nd p...

...ctory. More details at end. I am sorry if this is very easy to configure, but as long as I am unable to do it I will be very grateful for any help. All the best Jon Egil Strand M.Sc ----------------------------------- Compilation details ----------------------------------- gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c qp.c -o qp.o gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c tprs.c -o tprs.o gcc -bundle -flat_namespace -undefined suppress -L/...

...9; Content type 'application/x-tar' length 626712 bytes opened URL ================================================== downloaded 612Kb * Installing *source* package 'Matrix' ... ** libs The downloaded packages are in /private/tmp/RtmpPddsAE/downloaded_packages gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -I./Metis -fno-common -g -O2 -c HBMM.c -o HBMM.o In file included from HBMM.c:2: iohb.h:6:19: malloc.h: No such file or directory make: *** [HBMM.o] Error 1 ERROR: compilation failed for package 'Matrix' trying...

...te error message is given below. Thank you! Stefanie * Installing to library '/Library/Frameworks/R.framework/Resources/ library' * Installing *source* package 'rmutil' ... ** libs ** arch - i386 gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk - std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/Library/Frameworks/R.framework/Resources/include/i386 - msse3 -fPIC -g -O2 -march=nocona -c cutil.c -o cutil.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk - std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/R...

...: sqlca Error in library(ROracle) : .First.lib failed My configuration: Gentoo 1.4 - kernel 2.4.20 Oracle 9.2.0.4 (upgraded 9.2.0.2) I compiled ROracle with the necessary Oracle libraries in the path. My LD_LIBRARY_PATH is set to: /u01/app/oracle/product/9.2.0/lib:/u01/app/oracle/product/9.2.0/precomp/public :/u01/app/oracle/product/9.2.0/sqlplus/public:/u01/app/oracle/product/9.2.0/precomp/lib My other oracle applications run fine as far as I can tell. I can also compile and execute the Oracle sample12 which does an include of sqlca.h and uses dynamic SQL (under the same envrionment conditio...

...T environment variable set to: 10.1 /Users/kjhealy/downloads/R-1.7.0/modules/R_X11.so is unchanged making Rsock.d from Rsock.c making internet.d from internet.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c gcc -no-cpp-precomp -I. -I../../../src/include -I../../../src/include -I/sw/include -I/usr/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c Rsock.c -o Rsock.lo Rsock.c: In function `R_SockConnect': Rsock.c:380: warning: passing arg 5 of `getsockopt' from incompatible pointer type gcc -no-cpp-precomp -I...

...cking for main in -ludunits... yes checking for /Users/zpzhang/research/library/include/netcdf.h... yes checking for /Users/zpzhang/research/library/include/udunits.h... yes configure: creating ./config.status config.status: creating R/load.R config.status: creating src/Makevars ** libs gcc -no-cpp-precomp -I/sw/Library/Frameworks/R.framework/Resources/ include -I/Users/zpzhang/research/library/include -I/Users/zpzhang/research/ library/include -I/sw/include -fno-common -g -O2 -c RNetCDF.c -o RNetCDF.o gcc: unrecognized option '-no-cpp-precomp' gcc -bundle -flat_namespace -undefined suppr...

.... "make" gave the following error after an apparently successful ./configure: [snip] util.c: In function 'Rf_type2char': util.c:247: warning: return discards qualifiers from pointer target type gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/ pcre -no-cpp-precomp -I. -I../../src/include -I../../src/include -I/ usr/local/include -DHAVE_CONFIG_H -fPIC -fno-common -g -O2 - std=gnu99 -c version.c -o version.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/ pcre -no-cpp-precomp -I. -I../../src/include -I../../src/include -I/ usr/loca...

...Makefile.perl: No such file or directory make: *** No rule to make target `Makefile.perl'. Stop. chmod: blib/lib/R.pm: No such file or directory Finished configuration ** libs ** arch - i386 gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/ R.framework/Resources/include -I/Library/Frameworks/R.framework/ Resources/include/i386 -I. -arch i386 -arch ppc -g -pipe -fno-common - DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -Wdeclaration-after- statement -I/usr/local/include -I/System/Library/Perl/5.8.8/dar...

...n of R and the Xcode tools. I'm trying to compile a C source code with the R compiler in X11, and I receive the following error message: [Macintosh:School Work 07-08/36-711/HW 3] dajmcdon% R CMD SHLIB McDonaldHW3.c gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -march=nocona -c McDonaldHW3.c -o McDonaldHW3.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl...

...n of R and the Xcode tools. I'm trying to compile a C source code with the R compiler in X11, and I receive the following error message: [Macintosh:School Work 07-08/36-711/HW 3] dajmcdon% R CMD SHLIB McDonaldHW3.c gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -march=nocona -c McDonaldHW3.c -o McDonaldHW3.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl...

...age 'Hmisc' ... ** libs g77 -fno-common -g -O2 -c cidxcn.f -o cidxcn.o g77 -fno-common -g -O2 -c cidxcp.f -o cidxcp.o g77 -fno-common -g -O2 -c hoeffd.f -o hoeffd.o g77 -fno-common -g -O2 -c jacklins.f -o jacklins.o g77 -fno-common -g -O2 -c largrec.f -o largrec.o gcc -no-cpp-precomp -I/Applications/StartR.app/RAqua.app/Contents/include -I/usr/local/include -fno-common -g -O2 -c ranksort.c -o ranksort.o dyld: gcc version mismatch for library: /usr/local/lib/libiconv.2.dylib (compatibility version of user: 5.0.0 greater than library's version: 4.0.0) make: *** [rankso...

...* Installing *source* package 'RMySQL' ... creating cache ./config.cache checking how to run the C preprocessor... cc -E checking for mysql_init in -lmysqlclient... no checking for mysql.h... no updating cache ./config.cache creating ./config.status creating src/Makevars ** libs gcc -no-cpp-precomp -I/usr/local/lib/R/include -I/usr/local/mysql/include -I/sw/include -fno-common -g -O2 -c RS-DBI.c -o RS-DBI.o gcc -no-cpp-precomp -I/usr/local/lib/R/include -I/usr/local/mysql/include -I/sw/include -fno-common -g -O2 -c RS-MySQL.c -o RS-MySQL.o gcc -bundle -flat_namespace -undefined supp...

I am trying to make R-1.5.0 from source on a new G4 system with the apple developer tools and X11 installed and with ATLAS. Running ./configure appears to end normally, but running make yields: gcc -no-cpp-precomp -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c Rdynload.c -o Rdynload.o Rdynload.c: In function `R_FindSymbol': Rdynload.c:942: `CFunTab' undeclared (first use in this function) Rdynload.c:942: (Each undeclared identifier is reported only once R...

...-W -Winline -DFLaC__INLINE=__inline__ -c `test -f 'encode.c' || echo './'`encode.c encode.c:117: undefined type, found `OggFLAC__StreamEncoder' encode.c:118: undefined type, found `OggFLAC__StreamEncoder' encode.c:119: undefined type, found `OggFLAC__StreamEncoder' cpp-precomp: warning: errors during smart preprocessing, retrying in basic mode encode.c:117: parse error before '*' token encode.c:118: parse error before '*' token encode.c:119: parse error before '*' token make[3]: *** [encode.o] Error 1 make[2]: *** [all-recursive] Error 1 make[1]:...