Full_Name: Ziying Sherwin
Version: 1.3.0
OS: Solaris 2.8
Submission from: (NULL) (130.14.31.32)
We tried to install R on our Sun Solaris 2.8 machine using gcc 3.0. During the
compilation,
we got error messages like:
gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include
-DHAVE_CONFIG_H -g -O2 -c sockconn.c -o sockconn.o
gcc -shared -o internet.so Rsock.o internet.o nanoftp.o nanohttp.o sock.o
sockconn.o
Text relocation remains referenced
against symbol offset in file
sscanf 0x14a0 nanoftp.o
<unknown> 0x508 Rsock.o
<unknown> 0x400 Rsock.o
<unknown> 0x4f4 Rsock.o
<unknown> 0x40 Rsock.o
<unknown> 0x44 Rsock.o
<unknown> 0x290 Rsock.o
<unknown> 0x60 Rsock.o
<unknown> 0x640 Rsock.o
<unknown> 0x280 Rsock.o
<unknown> 0x3f8 Rsock.o
<unknown> 0x384 Rsock.o
<unknown> 0x628 Rsock.o
<unknown> 0x630 Rsock.o
<unknown> 0x680 Rsock.o
<unknown> 0x374 Rsock.o
<unknown> 0x36c Rsock.o
<unknown> 0x3cc Rsock.o
<unknown> 0x3c8 Rsock.o
<unknown> 0x684 Rsock.o
getSelectedHandler 0x10fc nanohttp.o
getSelectedHandler 0x96c nanohttp.o
getSelectedHandler 0x344 Rsock.o
getSelectedHandler 0x5a4 Rsock.o
getSelectedHandler 0x18e8 nanoftp.o
connect 0x240 sock.o
connect 0x1520 nanoftp.o
connect 0xe64 nanoftp.o
connect 0x1014 nanohttp.o
connect 0x4bc Rsock.o
Sock_listen 0x778 Rsock.o
Sock_listen 0xb0 Rsock.o
memset 0x540 Rsock.o
memset 0x2c8 Rsock.o
memset 0xbc0 nanoftp.o
memset 0xc nanohttp.o
memset 0xc nanoftp.o
memset 0x608 nanohttp.o
memset 0x1dc Rsock.o
memset 0x1098 nanohttp.o
memset 0x67c nanoftp.o
memset 0x1398 nanoftp.o
...
dummy_vfprintf 0x3f0 sockconn.o
<unknown> 0x1344 nanoftp.o
<unknown> 0x1348 nanoftp.o
<unknown> 0x134c nanoftp.o
<unknown> 0x1338 nanoftp.o
<unknown> 0x1350 nanoftp.o
<unknown> 0x1354 nanoftp.o
<unknown> 0x1358 nanoftp.o
<unknown> 0x135c nanoftp.o
<unknown> 0x1324 nanoftp.o
<unknown> 0x1340 nanoftp.o
<unknown> 0x131c nanoftp.o
<unknown> 0x133c nanoftp.o
<unknown> 0x1318 nanoftp.o
<unknown> 0x1334 nanoftp.o
<unknown> 0x1314 nanoftp.o
<unknown> 0x1310 nanoftp.o
<unknown> 0x1330 nanoftp.o
<unknown> 0x130c nanoftp.o
<unknown> 0x132c nanoftp.o
<unknown> 0x1328 nanoftp.o
<unknown> 0x1320 nanoftp.o
ld: fatal: relocations remain against allocatable but non-writable sections
collect2: ld returned 1 exit status
make[4]: *** [internet.so] Error 1
make[4]: Leaving directory `/site5/R_1.3.0.dir/R-1.3.0/src/modules/internet'
make[3]: *** [R] Error 2
make[3]: Leaving directory `/site5/R_1.3.0.dir/R-1.3.0/src/modules/internet'
make[2]: *** [R] Error 1
make[2]: Leaving directory `/site5/R_1.3.0.dir/R-1.3.0/src/modules'
make[1]: *** [R] Error 1
make[1]: Leaving directory `/site5/R_1.3.0.dir/R-1.3.0/src'
make: *** [R] Error 1
What is wrong?
Thanks,
Ziying Sherwin
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On Fri, 29 Jun 2001 sherwin@nlm.nih.gov wrote:> Full_Name: Ziying Sherwin > Version: 1.3.0 > OS: Solaris 2.8 > Submission from: (NULL) (130.14.31.32) > > > We tried to install R on our Sun Solaris 2.8 machine using gcc 3.0. During the > compilation, > we got error messages like:You've forgotten -fPIC. That should be found automatically: it is on my Solaris 2.7 system using gcc-3.0. Set CPICFLAGS (and probably FPICFLAGS and CXXPICFLAGS) in config.site, make clean, reconfigure, rebuild.> > gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include > -DHAVE_CONFIG_H -g -O2 -c sockconn.c -o sockconn.o > gcc -shared -o internet.so Rsock.o internet.o nanoftp.o nanohttp.o sock.o > sockconn.o > Text relocation remains referenced > against symbol offset in file > sscanf 0x14a0 nanoftp.o > <unknown> 0x508 Rsock.o > <unknown> 0x400 Rsock.o > <unknown> 0x4f4 Rsock.o > <unknown> 0x40 Rsock.o > <unknown> 0x44 Rsock.o > <unknown> 0x290 Rsock.o > <unknown> 0x60 Rsock.o > <unknown> 0x640 Rsock.o > <unknown> 0x280 Rsock.o > <unknown> 0x3f8 Rsock.o > <unknown> 0x384 Rsock.o > <unknown> 0x628 Rsock.o > <unknown> 0x630 Rsock.o > <unknown> 0x680 Rsock.o > <unknown> 0x374 Rsock.o > <unknown> 0x36c Rsock.o > <unknown> 0x3cc Rsock.o > <unknown> 0x3c8 Rsock.o > <unknown> 0x684 Rsock.o > getSelectedHandler 0x10fc nanohttp.o > getSelectedHandler 0x96c nanohttp.o > getSelectedHandler 0x344 Rsock.o > getSelectedHandler 0x5a4 Rsock.o > getSelectedHandler 0x18e8 nanoftp.o > connect 0x240 sock.o > connect 0x1520 nanoftp.o > connect 0xe64 nanoftp.o > connect 0x1014 nanohttp.o > connect 0x4bc Rsock.o > Sock_listen 0x778 Rsock.o > Sock_listen 0xb0 Rsock.o > memset 0x540 Rsock.o > memset 0x2c8 Rsock.o > memset 0xbc0 nanoftp.o > memset 0xc nanohttp.o > memset 0xc nanoftp.o > memset 0x608 nanohttp.o > memset 0x1dc Rsock.o > memset 0x1098 nanohttp.o > memset 0x67c nanoftp.o > memset 0x1398 nanoftp.o > ... > dummy_vfprintf 0x3f0 sockconn.o > <unknown> 0x1344 nanoftp.o > <unknown> 0x1348 nanoftp.o > <unknown> 0x134c nanoftp.o > <unknown> 0x1338 nanoftp.o > <unknown> 0x1350 nanoftp.o > <unknown> 0x1354 nanoftp.o > <unknown> 0x1358 nanoftp.o > <unknown> 0x135c nanoftp.o > <unknown> 0x1324 nanoftp.o > <unknown> 0x1340 nanoftp.o > <unknown> 0x131c nanoftp.o > <unknown> 0x133c nanoftp.o > <unknown> 0x1318 nanoftp.o > <unknown> 0x1334 nanoftp.o > <unknown> 0x1314 nanoftp.o > <unknown> 0x1310 nanoftp.o > <unknown> 0x1330 nanoftp.o > <unknown> 0x130c nanoftp.o > <unknown> 0x132c nanoftp.o > <unknown> 0x1328 nanoftp.o > <unknown> 0x1320 nanoftp.o > ld: fatal: relocations remain against allocatable but non-writable sections > collect2: ld returned 1 exit status > make[4]: *** [internet.so] Error 1 > make[4]: Leaving directory `/site5/R_1.3.0.dir/R-1.3.0/src/modules/internet' > make[3]: *** [R] Error 2 > make[3]: Leaving directory `/site5/R_1.3.0.dir/R-1.3.0/src/modules/internet' > make[2]: *** [R] Error 1 > make[2]: Leaving directory `/site5/R_1.3.0.dir/R-1.3.0/src/modules' > make[1]: *** [R] Error 1 > make[1]: Leaving directory `/site5/R_1.3.0.dir/R-1.3.0/src' > make: *** [R] Error 1 > > What is wrong? > > Thanks, > Ziying Sherwin > > -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- > r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html > Send "info", "help", or "[un]subscribe" > (in the "body", not the subject !) To: r-devel-request@stat.math.ethz.ch > _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._ >-- Brian D. Ripley, ripley@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272860 (secr) Oxford OX1 3TG, UK Fax: +44 1865 272595 -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-devel-request@stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._
Prof. Ripley, Thanks for the tip on how to compile R. We successfully compiled the R until we met another error: Underfull \hbox (badness 10000) has occurred while \output is active []\T1/aer/m/n/10 null null null [881] [882] [883] Underfull \vbox (badness 10000) has occurred while \output is active [884] Underfull \vbox (badness 10000) has occurred while \output is active [885] [886] [887] Underfull \vbox (badness 10000) has occurred while \output is active [888] [889] [890] [891]) [892] No file refman.ind. (refman.aux) ) (see the transcript file for additional information)<cmmi.enc><cmmi5.pfb><cmsy. enc><cmbsy7.pfb> ! Warning: pdftex (file cmbsy7.pfb): Base font name mismatch: `CMBSY7' (in font file) and `cmbsy7' (in map file)! The name specified in map file was ignored <cmtextit.enc><cmbxti10.pfb><cmmib10.pfb><cmtext.enc><cmitt10.p fb ! Warning: pdftex (file cmitt10.pfb): glyph `quotedblright' undefined><cmr5.pfb><cmex.enc><cmex10.pfb><cmsy7.pfb><cmr7.pfb><cmmi7.pfb><cmmi10.pfb><cmttext.enc><cmtt9.pfb><cmbx10.pfb><cmti10.pfb><cmtt10.pfb><cmtt12.pfb><cmsl10 .pfb><cmss10.pfb><cmsy10.pfb><cmr12.pfb><cmr17.pfb><cmss17.pfb><cmbx12.pfb><cmr 10.pfb> Output written on refman.pdf (897 pages, 3551555 bytes). Transcript written on refman.log. *** Error code 1 make: Fatal error: Command failed for target `refman.pdf' Current working directory /site5/R_1.3.0.dir/R-1.3.0/doc/manual *** Error code 1 make: Fatal error: Command failed for target `pdf' Current working directory /site5/R_1.3.0.dir/R-1.3.0/doc *** Error code 1 (ignored) Do you have any ideas about what might be wrong? Thanks. Ziying Sherwin -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-devel-request@stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._
On Mon, 2 Jul 2001, Ziying Sherwin wrote:> Prof. Ripley, > > Thanks for the tip on how to compile R. We successfully compiled the R until we > met another error: > > Underfull \hbox (badness 10000) has occurred while \output is active > []\T1/aer/m/n/10 null null null > [881] [882] [883] > Underfull \vbox (badness 10000) has occurred while \output is active [884] > Underfull \vbox (badness 10000) has occurred while \output is active [885] > [886] [887] > Underfull \vbox (badness 10000) has occurred while \output is active [888] > [889] [890] [891]) [892] > No file refman.ind. > (refman.aux) ) > (see the transcript file for additional information)<cmmi.enc><cmmi5.pfb><cmsy. > enc><cmbsy7.pfb> > ! Warning: pdftex (file cmbsy7.pfb): > Base font name mismatch: `CMBSY7' (in font file) and `cmbsy7' (in map file)! > The name specified in map file was ignored > <cmtextit.enc><cmbxti10.pfb><cmmib10.pfb><cmtext.enc><cmitt10.p > fb > ! Warning: pdftex (file cmitt10.pfb): > glyph `quotedblright' undefined > ><cmr5.pfb><cmex.enc><cmex10.pfb><cmsy7.pfb><cmr7.pfb><cmmi7.pfb><cmmi10.pfb> > <cmttext.enc><cmtt9.pfb><cmbx10.pfb><cmti10.pfb><cmtt10.pfb><cmtt12.pfb><cmsl10 > .pfb><cmss10.pfb><cmsy10.pfb><cmr12.pfb><cmr17.pfb><cmss17.pfb><cmbx12.pfb><cmr > 10.pfb> > Output written on refman.pdf (897 pages, 3551555 bytes). > Transcript written on refman.log. > *** Error code 1 > make: Fatal error: Command failed for target `refman.pdf' > Current working directory /site5/R_1.3.0.dir/R-1.3.0/doc/manual > *** Error code 1 > make: Fatal error: Command failed for target `pdf' > Current working directory /site5/R_1.3.0.dir/R-1.3.0/doc > *** Error code 1 (ignored) > > Do you have any ideas about what might be wrong?Yes. Your pdftex installation is corrupt. Is the error message> Base font name mismatch: `CMBSY7' (in font file) and `cmbsy7' (in mapfile)! not clear enough? Get a correct pdftex installation, with a correct psfonts.map file! Looks like there might be more wrong than that. -- Brian D. Ripley, ripley@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272860 (secr) Oxford OX1 3TG, UK Fax: +44 1865 272595 -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-devel-request@stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._