Agustin Lobo
2002-Jul-15 09:56 UTC
[R] R1.5.1 compilation ans install: 2 previous questions
I'm geting ready to compile and install R-1.5.1 (R-patched_2002-07-15.tar.gz) on Linux (Suse 8.0, 2 AMD proc., ATLAS libs installed). My current version is R.1.4.0 I'd like to get advice on two doubts: 1. Is it better that I remove my current /usr/lib/R directory? 2. Regarding ATLAS, the R-1.5.1 R-admin manual states : "This is currently not supported. The problem is that SIGINT signals will not be handled properly when sent during a multi-threaded ATLAS computation, and this may result in a segmentation fault". Does this mean that I should avoid the --with-blas=/usr/lib/libatlas.a option for ./configure ? Agus Thanks Dr. Agustin Lobo Instituto de Ciencias de la Tierra (CSIC) Lluis Sole Sabaris s/n 08028 Barcelona SPAIN tel 34 93409 5410 fax 34 93411 0012 alobo at ija.csic.es -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._
Peter Dalgaard BSA
2002-Jul-15 10:04 UTC
[R] R1.5.1 compilation ans install: 2 previous questions
Agustin Lobo <alobo at paleo.ija.csic.es> writes:> I'm geting ready to compile and install R-1.5.1 > (R-patched_2002-07-15.tar.gz) on Linux > (Suse 8.0, 2 AMD proc., ATLAS libs installed). > My current version is R.1.4.0 > > I'd like to get advice on two doubts: > > 1. Is it better that I remove my current /usr/lib/R directory? > > 2. Regarding ATLAS, the R-1.5.1 R-admin manual states : > "This is currently not supported. The problem is that SIGINT signals > will not be handled properly when sent during a multi-threaded ATLAS > computation, and this may result in a segmentation fault". > > Does this mean that I should avoid the --with-blas=/usr/lib/libatlas.a > option for ./configure ?It's only an issue if ATLAS is multi-threaded, so it depends on your ATLAS. (And you might decide to live with the bug, if you have a multi-CPU system since the speedup can be quite substantial.) -- O__ ---- Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907 -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._