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Michael Steinbeck-Reeves

2008-May-07 20:09 UTC

[R] Problem installing tseries under FC7 x86_64

I have just installed the 64 bit version of R, using yum. The version
is: 2.6.2-1.fc7.1.x86_64.

I installed zoo without any major problem and the same with quadprog (a
few warnings). However, when I came to install tseries I get the
following:

 install.packages()
Warning in install.packages() :
  argument 'lib' is missing: using
'/home/xxxxxx/R/x86_64-redhat-linux-gnu-library/2.6'
trying URL
'http://cran.uk.r-project.org/src/contrib/tseries_0.10-14.tar.gz'
Content type 'application/x-gzip' length 171219 bytes (167 Kb)
opened URL
=================================================downloaded 167 Kb

* Installing *source* package 'tseries' ...
** libs
gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/include/R
-I/usr/local/include    -fpic  -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -c arma.c -o arma.o
gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/include/R
-I/usr/local/include    -fpic  -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -c bdstest.c -o bdstest.o
bdstest.c:25:15: error: R.h: No such file or directory
bdstest.c: In function ?freeall?:
bdstest.c:86: warning: implicit declaration of function ?Free?
bdstest.c: In function ?evalc?:
bdstest.c:172: warning: implicit declaration of function ?Rprintf?
bdstest.c: In function ?fkc?:
bdstest.c:289: warning: implicit declaration of function ?Calloc?
bdstest.c:289: error: expected expression before ?int?
bdstest.c:289: warning: assignment makes pointer from integer without a
cast
bdstest.c:290: error: expected expression before ?int?
bdstest.c:290: warning: assignment makes pointer from integer without a
cast
bdstest.c:295: error: expected expression before ?struct?
bdstest.c:295: warning: assignment makes pointer from integer without a
cast
bdstest.c:300: error: expected expression before ?short?
bdstest.c:300: warning: assignment makes pointer from integer without a
cast
bdstest.c:307: error: expected expression before ?short?
bdstest.c:307: warning: assignment makes pointer from integer without a
cast
bdstest.c:309: warning: implicit declaration of function ?error?
bdstest.c:352: warning: implicit declaration of function ?qsort?
make: *** [bdstest.o] Error 1
ERROR: compilation failed for package 'tseries'
** Removing '/home/xxxxx/R/x86_64-redhat-linux-gnu-library/2.6/tseries'

The downloaded packages are in
        /tmp/RtmpocpCZU/downloaded_packages
Warning message:
In install.packages() :
  installation of package 'tseries' had non-zero exit status

I realise that R.h is missing and is not on my machine anywhere. What
have I missed?

Thanks,

Michael

Gavin Simpson

2008-May-07 20:30 UTC

head link

[R] Problem installing tseries under FC7 x86_64

On Wed, 2008-05-07 at 21:09 +0100, Michael Steinbeck-Reeves
wrote:> I have just installed the 64 bit version of R, using yum. The version
> is: 2.6.2-1.fc7.1.x86_64.
Could it be that you don't have the development "headers" for R?
Try:

yum install R-devel

as root in a console and then try installing tseries within R.

HTH

G
> 
> I installed zoo without any major problem and the same with quadprog (a
> few warnings). However, when I came to install tseries I get the
> following:
> 
>  install.packages()
> Warning in install.packages() :
>   argument 'lib' is missing: using
> '/home/xxxxxx/R/x86_64-redhat-linux-gnu-library/2.6'
> trying URL
> 'http://cran.uk.r-project.org/src/contrib/tseries_0.10-14.tar.gz'
> Content type 'application/x-gzip' length 171219 bytes (167 Kb)
> opened URL
> =================================================> downloaded 167 Kb
> 
> * Installing *source* package 'tseries' ...
> ** libs
> gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/include/R
> -I/usr/local/include    -fpic  -O2 -g -pipe -Wall
> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m64 -mtune=generic -c arma.c -o arma.o
> gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/include/R
> -I/usr/local/include    -fpic  -O2 -g -pipe -Wall
> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m64 -mtune=generic -c bdstest.c -o bdstest.o
> bdstest.c:25:15: error: R.h: No such file or directory
> bdstest.c: In function ?freeall?:
> bdstest.c:86: warning: implicit declaration of function ?Free?
> bdstest.c: In function ?evalc?:
> bdstest.c:172: warning: implicit declaration of function ?Rprintf?
> bdstest.c: In function ?fkc?:
> bdstest.c:289: warning: implicit declaration of function ?Calloc?
> bdstest.c:289: error: expected expression before ?int?
> bdstest.c:289: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:290: error: expected expression before ?int?
> bdstest.c:290: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:295: error: expected expression before ?struct?
> bdstest.c:295: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:300: error: expected expression before ?short?
> bdstest.c:300: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:307: error: expected expression before ?short?
> bdstest.c:307: warning: assignment makes pointer from integer without a
> cast
> bdstest.c:309: warning: implicit declaration of function ?error?
> bdstest.c:352: warning: implicit declaration of function ?qsort?
> make: *** [bdstest.o] Error 1
> ERROR: compilation failed for package 'tseries'
> ** Removing
'/home/xxxxx/R/x86_64-redhat-linux-gnu-library/2.6/tseries'
> 
> The downloaded packages are in
>         /tmp/RtmpocpCZU/downloaded_packages
> Warning message:
> In install.packages() :
>   installation of package 'tseries' had non-zero exit status
> 
> I realise that R.h is missing and is not on my machine anywhere. What
> have I missed?
> 
> Thanks,
> 
> Michael
> 
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.-- 
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 Dr. Gavin Simpson             [t] +44 (0)20 7679 0522
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Simone Russo

2008-Oct-13 13:12 UTC

head link

[R] Problem installing tseries under FC7 x86_64

Dear Michal,
I had the same problem of you in installing quadprog packages ?
Did you resolve it?
Can you help me?
 the error is:
* Installing *source* package 'quadprog' ...
** libs
gfortran   -fpic  -g -O2 -c aind.f -o aind.o
In order to use gfortran please type either:
source /usr/local/free/gfortran.csh
. /usr/local/free/gfortran.sh
make: *** [aind.o] Error 1
ERROR: compilation failed for package 'quadprog'
** Removing '/usr/people/russo/R/i686-pc-linux-gnu-library/2.5/quadprog'
Warning message:
installation of package 'quadprog_1.4-11.tar.gz' had non-zero exit 
status in: install.packages("quadprog_1.4-11.tar.gz", repos = NULL,
type
= "/usr/local/free/gfortran.csh")
Thank you in advances!
Simone

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