On Thu, 26 Jul 2007, Michael Cassin wrote:
> Hi,
>
> I'm running R 2.4.1 on Fedora Core 6 and am unable to install the
tseries
> package. I've resolved a few problems getting to this point, by
running a
> yum update, installing the gcc-gfortran dependency, but now I'm stuck.
> Could someone please point me in the right direction?
Please read the posting guide and provide the information you were asked
for: only then we may be able to help you.
You seem to have a system which installed R in /usr/lib/R but has x86_64
components on it. So what architecture is it that you are trying to run?
My guess is that you installed a i386 RPM on a x86_64 OS. That will
install and R will run *but* you will not be able to use it to install
packages. If you installed the i386 RPM after the x86_64 one, it will
have overwritten some crucial files including /usr/bin/R.
It is possible to have i386 and x86_64 R coexisting on x86_64 Linux, but
not by installing RPMs for different architectures.
>
> ========R install.packages output ======>
=================================>
>> install.packages("tseries")
>
> trying URL '
> http://www.sourcekeg.co.uk/cran/src/contrib/tseries_0.10-11.tar.gz'
> Content type 'application/x-tar' length 182043 bytes
> opened URL
> =================================================> downloaded 177Kb
>
> * Installing *source* package 'tseries' ...
> ** libs
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> -fpic -O3 -g -std=gnu99 -c arma.c -o arma.o
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> -fpic -O3 -g -std=gnu99 -c bdstest.c -o bdstest.o
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> -fpic -O3 -g -std=gnu99 -c boot.c -o boot.o
> gfortran -fpic -O2 -g -c dsumsl.f -o dsumsl.o
> In file dsumsl.f:450
>
> IF (IV(1) - 2) 30, 40, 50
> 1
> Warning: Obsolete: arithmetic IF statement at (1)
> In file dsumsl.f:3702
>
> 10 ASSIGN 30 TO NEXT
> 1
> Warning: Obsolete: ASSIGN statement at (1)
> In file dsumsl.f:3707
>
> 20 GO TO NEXT,(30, 50, 70, 110)
> 1
> Warning: Obsolete: Assigned GOTO statement at (1)
> In file dsumsl.f:3709
>
> ASSIGN 50 TO NEXT
> 1
> Warning: Obsolete: ASSIGN statement at (1)
> In file dsumsl.f:3718
>
> ASSIGN 70 TO NEXT
> 1
> Warning: Obsolete: ASSIGN statement at (1)
> In file dsumsl.f:3724
>
> ASSIGN 110 TO NEXT
> 1
> Warning: Obsolete: ASSIGN statement at (1)
> In file dsumsl.f:4552
>
> IF (IV(1) - 2) 999, 30, 70
> 1
> Warning: Obsolete: arithmetic IF statement at (1)
> In file dsumsl.f:4714
>
> IF (IRC) 140, 100, 210
> 1
> Warning: Obsolete: arithmetic IF statement at (1)
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> -fpic -O3 -g -std=gnu99 -c garch.c -o garch.o
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> -fpic -O3 -g -std=gnu99 -c ppsum.c -o ppsum.o
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> -fpic -O3 -g -std=gnu99 -c tsutils.c -o tsutils.o
> gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o tseries.so arma.o
> bdstest.o boot.o dsumsl.o garch.o ppsum.o tsutils.o -L/usr/lib/R/lib
-lRblas
> -lgfortran -lm -lgcc_s -lgfortran -lm -lgcc_s -L/usr/lib/R/lib -lR
> /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libRblas.so when
searching
> for -lRblas
> /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libRblas.so when
searching
> for -lRblas
> /usr/bin/ld: cannot find -lRblas
> collect2: ld returned 1 exit status
> make: *** [tseries.so] Error 1
> ERROR: compilation failed for package 'tseries'
> ** Removing '/usr/lib/R/library/tseries'
>
>
> ============================================>
============================================>
>
> I presume the priority is addressing the error: "/usr/bin/ld: cannot
find
> -lRblas"
>
> I have the libRblas.so file with R 2.4. Do I need to upgrade to R 2.5 - In
> which case I'll be asking how to fix the problems I'm having doing
that ;)
>
> [~]# yum provides libRblas.so
> <snip>
>
> R.x86_64 2.5.1-2.fc6 extras
> Matched from:
> /usr/lib64/R/lib/libRblas.so
> libRblas.so()(64bit)
>
> R.x86_64 2.5.1-2.fc6 extras
> Matched from:
> /usr/lib64/R/lib/libRblas.so
> libRblas.so()(64bit)
>
> R.i386 2:2.4.1-1.fc6 installed
> Matched from:
> /usr/lib/R/lib/libRblas.so
> libRblas.so
>
> R.x86_64 2.4.1-4.fc6 installed
> Matched from:
> /usr/lib64/R/lib/libRblas.so
> libRblas.so()(64bit)
>
>
> Regards,
> Mike
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
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> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595